FFCP PHASE1:Hg19::chr11:60739122..60739137,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=923 | |EntrezGene=923 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1691 | |HGNC=1691 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=7bp_to_ENST00000344028,ENST00000346437,uc001nqp.2,uc001nqq.2,uc001nqr.2,uc001nqs.2,uc001nqt.2,uc009yni.2,uc009ynj.2_5end | |association_with_transcript=7bp_to_ENST00000344028,ENST00000346437,uc001nqp.2,uc001nqq.2,uc001nqr.2,uc001nqs.2,uc001nqt.2,uc009yni.2,uc009ynj.2_5end | ||
|cluster_id=chr11:60739122..60739137,+ | |||
|coexpression_cluster_id=C23 | |coexpression_cluster_id=C23 | ||
|description=CAGE_peak_2_at_CD6_5end | |description=CAGE_peak_2_at_CD6_5end | ||
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|ontology_enrichment_celltype=CL:0000084!1.70e-39!25;CL:0000827!1.70e-39!25;CL:0000791!2.59e-35!18;CL:0000789!2.59e-35!18;CL:0002420!2.59e-35!18;CL:0002419!2.59e-35!18;CL:0000790!2.59e-35!18;CL:0000838!1.45e-31!52;CL:0000542!8.90e-31!53;CL:0000051!8.90e-31!53;CL:0000738!2.49e-27!140;CL:0002087!4.42e-26!119;CL:0000625!9.08e-22!11;CL:0002031!1.49e-21!124;CL:0000037!2.69e-21!172;CL:0000566!2.69e-21!172;CL:0000988!2.84e-19!182;CL:0002032!2.51e-18!165;CL:0000837!2.51e-18!165;CL:0000624!1.19e-13!6;CL:0000898!1.61e-07!3;CL:0000842!2.20e-07!3;CL:0000623!3.19e-07!3;CL:0000825!3.19e-07!3 | |ontology_enrichment_celltype=CL:0000084!1.70e-39!25;CL:0000827!1.70e-39!25;CL:0000791!2.59e-35!18;CL:0000789!2.59e-35!18;CL:0002420!2.59e-35!18;CL:0002419!2.59e-35!18;CL:0000790!2.59e-35!18;CL:0000838!1.45e-31!52;CL:0000542!8.90e-31!53;CL:0000051!8.90e-31!53;CL:0000738!2.49e-27!140;CL:0002087!4.42e-26!119;CL:0000625!9.08e-22!11;CL:0002031!1.49e-21!124;CL:0000037!2.69e-21!172;CL:0000566!2.69e-21!172;CL:0000988!2.84e-19!182;CL:0002032!2.51e-18!165;CL:0000837!2.51e-18!165;CL:0000624!1.19e-13!6;CL:0000898!1.61e-07!3;CL:0000842!2.20e-07!3;CL:0000623!3.19e-07!3;CL:0000825!3.19e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.20e-47;18!CL:0000789;1.20e-47;18!CL:0002419;1.20e-47;18!CL:0000084;6.36e-47;25!CL:0000625;2.82e-30;11!CL:0000624;3.52e-22;6!CL:0000542;2.88e-17;53!CL:0000898;1.10e-11;3!CL:0000226;1.25e-11;3!CL:0000842;1.25e-11;3!CL:0000623;3.78e-11;3!CL:0000767;3.65e-10;3!CL:0000815;3.01e-08;2!CL:0000792;3.01e-08;2!CL:0002677;3.01e-08;2!CL:0002087;8.25e-07;104 | |ontology_enrichment_celltype_v019=CL:0000791;1.20e-47;18!CL:0000789;1.20e-47;18!CL:0002419;1.20e-47;18!CL:0000084;6.36e-47;25!CL:0000625;2.82e-30;11!CL:0000624;3.52e-22;6!CL:0000542;2.88e-17;53!CL:0000898;1.10e-11;3!CL:0000226;1.25e-11;3!CL:0000842;1.25e-11;3!CL:0000623;3.78e-11;3!CL:0000767;3.65e-10;3!CL:0000815;3.01e-08;2!CL:0000792;3.01e-08;2!CL:0002677;3.01e-08;2!CL:0002087;8.25e-07;104 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,8.56e-48,18;CL:0000789,8.56e-48,18;CL:0002420,8.56e-48,18;CL:0002419,8.56e-48,18;CL:0000790,8.56e-48,18;CL:0000084,5.39e-47,25;CL:0000827,5.39e-47,25;CL:0000625,2.38e-30,11;CL:0000838,3.49e-30,52;CL:0000542,1.69e-29,53;CL:0000051,1.69e-29,53;CL:0000624,2.90e-22,6;CL:0000738,1.91e-19,136;CL:0002087,4.26e-18,115;CL:0000037,3.19e-14,168;CL:0000988,4.24e-13,177;CL:0002031,5.88e-13,120;CL:0000898,9.06e-12,3;CL:0000226,1.55e-11,3;CL:0000842,1.55e-11,3;CL:0000623,2.91e-11,3;CL:0000825,2.91e-11,3;CL:0002032,9.28e-11,161;CL:0000837,9.28e-11,161;CL:0000767,2.18e-10,3;CL:0000815,2.39e-08,2;CL:0000792,2.39e-08,2;CL:0002677,2.39e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.20e-47;18!CL:0000051;2.88e-17;53 | |ontology_enrichment_development_v019=CL:0000790;1.20e-47;18!CL:0000051;2.88e-17;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.25e-14!15;UBERON:0000179!1.25e-14!15;UBERON:0000463!1.25e-14!15;UBERON:0002390!2.94e-10!102;UBERON:0003061!2.94e-10!102;UBERON:0004177!5.19e-10!7;UBERON:0002193!2.08e-09!112;UBERON:0002370!6.86e-09!4;UBERON:0005058!6.86e-09!4;UBERON:0009113!6.86e-09!4;UBERON:0003295!6.86e-09!4;UBERON:0005562!6.86e-09!4 | |ontology_enrichment_uberon=UBERON:0000178!1.25e-14!15;UBERON:0000179!1.25e-14!15;UBERON:0000463!1.25e-14!15;UBERON:0002390!2.94e-10!102;UBERON:0003061!2.94e-10!102;UBERON:0004177!5.19e-10!7;UBERON:0002193!2.08e-09!112;UBERON:0002370!6.86e-09!4;UBERON:0005058!6.86e-09!4;UBERON:0009113!6.86e-09!4;UBERON:0003295!6.86e-09!4;UBERON:0005562!6.86e-09!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.66e-21;15!UBERON:0000179;5.66e-21;15!UBERON:0000463;5.66e-21;15!UBERON:0002390;6.85e-12;32!UBERON:0002370;4.07e-08;2!UBERON:0005058;4.07e-08;2!UBERON:0009113;4.07e-08;2 | |ontology_enrichment_uberon_v019=UBERON:0000178;5.66e-21;15!UBERON:0000179;5.66e-21;15!UBERON:0000463;5.66e-21;15!UBERON:0002390;6.85e-12;32!UBERON:0002370;4.07e-08;2!UBERON:0005058;4.07e-08;2!UBERON:0009113;4.07e-08;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.49e-21,15;UBERON:0000179,7.49e-21,15;UBERON:0000463,7.49e-21,15;UBERON:0002370,9.43e-09,4;UBERON:0005058,9.43e-09,4;UBERON:0009113,9.43e-09,4;UBERON:0003295,9.43e-09,4;UBERON:0005562,9.43e-09,4 | |||
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|short_description=p2@CD6 | |short_description=p2@CD6 | ||
}} | }} |
Latest revision as of 14:49, 18 September 2015
Short description: | p2@CD6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CD6_5end |
Coexpression cluster: | C23_CD4_CD8_Natural_Peripheral_Basophils_CD19_CD14 |
Association with transcript: | 7bp_to_ENST00000344028, ENST00000346437, uc001nqp.2, uc001nqq.2, uc001nqr.2, uc001nqs.2, uc001nqt.2, uc009yni.2, uc009ynj.2_5end |
EntrezGene: | CD6 |
HGNC: | 1691 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 8.56e-48 | 18 |
alpha-beta T cell | 8.56e-48 | 18 |
immature T cell | 8.56e-48 | 18 |
mature T cell | 8.56e-48 | 18 |
immature alpha-beta T cell | 8.56e-48 | 18 |
T cell | 5.39e-47 | 25 |
pro-T cell | 5.39e-47 | 25 |
CD8-positive, alpha-beta T cell | 2.38e-30 | 11 |
lymphoid lineage restricted progenitor cell | 3.49e-30 | 52 |
lymphocyte | 1.69e-29 | 53 |
common lymphoid progenitor | 1.69e-29 | 53 |
CD4-positive, alpha-beta T cell | 2.90e-22 | 6 |
leukocyte | 1.91e-19 | 136 |
nongranular leukocyte | 4.26e-18 | 115 |
hematopoietic stem cell | 3.19e-14 | 168 |
hematopoietic cell | 4.24e-13 | 177 |
hematopoietic lineage restricted progenitor cell | 5.88e-13 | 120 |
naive T cell | 9.06e-12 | 3 |
single nucleate cell | 1.55e-11 | 3 |
mononuclear cell | 1.55e-11 | 3 |
natural killer cell | 2.91e-11 | 3 |
pro-NK cell | 2.91e-11 | 3 |
hematopoietic oligopotent progenitor cell | 9.28e-11 | 161 |
hematopoietic multipotent progenitor cell | 9.28e-11 | 161 |
basophil | 2.18e-10 | 3 |
regulatory T cell | 2.39e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.39e-08 | 2 |
naive regulatory T cell | 2.39e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 7.49e-21 | 15 |
haemolymphatic fluid | 7.49e-21 | 15 |
organism substance | 7.49e-21 | 15 |
thymus | 9.43e-09 | 4 |
hemolymphoid system gland | 9.43e-09 | 4 |
thymic region | 9.43e-09 | 4 |
pharyngeal gland | 9.43e-09 | 4 |
thymus primordium | 9.43e-09 | 4 |