FFCP PHASE1:Hg19::chr1:36772691..36772727,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79729 | |EntrezGene=79729 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26236 | |HGNC=26236 | ||
|TSSclassifier=strong | |||
|UniProt=D6RD64,A4FU49 | |UniProt=D6RD64,A4FU49 | ||
|association_with_transcript=0bp_to_ENST00000312808,ENST00000480549,ENST00000505871,NM_024676,uc010oib.1,uc010oic.1_5end | |association_with_transcript=0bp_to_ENST00000312808,ENST00000480549,ENST00000505871,NM_024676,uc010oib.1,uc010oic.1_5end | ||
|cluster_id=chr1:36772691..36772727,+ | |||
|description=CAGE_peak_1_at_SH3D21_5end | |description=CAGE_peak_1_at_SH3D21_5end | ||
|id=chr1:36772691..36772727,+ | |id=chr1:36772691..36772727,+ | ||
|ontology_enrichment_celltype=CL:0002009!3.07e-08!65;CL:0000766!6.02e-08!76;CL:0002057!1.78e-07!42;CL:0002194!2.08e-07!63;CL:0000576!2.08e-07!63;CL:0000040!2.08e-07!63;CL:0000559!2.08e-07!63;CL:0000557!3.80e-07!71 | |ontology_enrichment_celltype=CL:0002009!3.07e-08!65;CL:0000766!6.02e-08!76;CL:0002057!1.78e-07!42;CL:0002194!2.08e-07!63;CL:0000576!2.08e-07!63;CL:0000040!2.08e-07!63;CL:0000559!2.08e-07!63;CL:0000557!3.80e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0000473;1.09e-11;39!CL:0000234;1.09e-11;39!CL:0000860;1.56e-11;33!CL:0002057;1.56e-11;33 | |ontology_enrichment_celltype_v019=CL:0000473;1.09e-11;39!CL:0000234;1.09e-11;39!CL:0000860;1.56e-11;33!CL:0002057;1.56e-11;33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000473,4.45e-10,48;CL:0000234,4.45e-10,48;CL:0002009,8.20e-10,61;CL:0000766,2.94e-09,72;CL:0002194,6.83e-09,59;CL:0000576,6.83e-09,59;CL:0000040,6.83e-09,59;CL:0000559,6.83e-09,59;CL:0000557,2.02e-08,67;CL:0000860,8.69e-08,42;CL:0002057,8.69e-08,42;CL:0000839,5.81e-07,66 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.27e-11!57;UBERON:0005068!4.27e-11!57;UBERON:0006241!4.27e-11!57;UBERON:0007135!4.27e-11!57;UBERON:0003075!1.04e-10!86;UBERON:0007284!1.04e-10!86;UBERON:0002346!1.33e-10!90;UBERON:0002616!2.05e-09!59;UBERON:0005743!4.29e-09!86;UBERON:0001017!5.37e-09!82;UBERON:0001869!6.52e-09!32;UBERON:0000955!6.56e-09!69;UBERON:0006238!6.56e-09!69;UBERON:0000073!8.87e-09!94;UBERON:0001016!8.87e-09!94;UBERON:0002780!9.35e-09!41;UBERON:0001890!9.35e-09!41;UBERON:0006240!9.35e-09!41;UBERON:0002020!1.24e-08!34;UBERON:0003528!1.24e-08!34;UBERON:0003080!1.52e-08!42;UBERON:0001893!2.22e-08!34;UBERON:0003056!3.30e-08!61;UBERON:0002791!5.47e-08!33;UBERON:0002619!6.24e-08!22;UBERON:0001950!2.15e-07!20;UBERON:0000956!2.47e-07!25;UBERON:0000203!2.47e-07!25;UBERON:0000062!7.74e-07!511 | |ontology_enrichment_uberon=UBERON:0001049!4.27e-11!57;UBERON:0005068!4.27e-11!57;UBERON:0006241!4.27e-11!57;UBERON:0007135!4.27e-11!57;UBERON:0003075!1.04e-10!86;UBERON:0007284!1.04e-10!86;UBERON:0002346!1.33e-10!90;UBERON:0002616!2.05e-09!59;UBERON:0005743!4.29e-09!86;UBERON:0001017!5.37e-09!82;UBERON:0001869!6.52e-09!32;UBERON:0000955!6.56e-09!69;UBERON:0006238!6.56e-09!69;UBERON:0000073!8.87e-09!94;UBERON:0001016!8.87e-09!94;UBERON:0002780!9.35e-09!41;UBERON:0001890!9.35e-09!41;UBERON:0006240!9.35e-09!41;UBERON:0002020!1.24e-08!34;UBERON:0003528!1.24e-08!34;UBERON:0003080!1.52e-08!42;UBERON:0001893!2.22e-08!34;UBERON:0003056!3.30e-08!61;UBERON:0002791!5.47e-08!33;UBERON:0002619!6.24e-08!22;UBERON:0001950!2.15e-07!20;UBERON:0000956!2.47e-07!25;UBERON:0000203!2.47e-07!25;UBERON:0000062!7.74e-07!511 | ||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.92e-08;32!UBERON:0002619;4.57e-08;22!UBERON:0003528;7.75e-08;34!UBERON:0002020;7.75e-08;34!UBERON:0001893;8.37e-08;34!UBERON:0002791;1.43e-07;32!UBERON:0001950;1.65e-07;20!UBERON:0000956;1.87e-07;25!UBERON:0000203;1.87e-07;25!UBERON:0000073;6.15e-07;53!UBERON:0002616;6.15e-07;53 | |ontology_enrichment_uberon_v019=UBERON:0001869;3.92e-08;32!UBERON:0002619;4.57e-08;22!UBERON:0003528;7.75e-08;34!UBERON:0002020;7.75e-08;34!UBERON:0001893;8.37e-08;34!UBERON:0002791;1.43e-07;32!UBERON:0001950;1.65e-07;20!UBERON:0000956;1.87e-07;25!UBERON:0000203;1.87e-07;25!UBERON:0000073;6.15e-07;53!UBERON:0002616;6.15e-07;53 | ||
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| ||
|short_description=p1@SH3D21 | |short_description=p1@SH3D21 | ||
}} | }} |
Latest revision as of 20:50, 17 September 2015
Short description: | p1@SH3D21 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SH3D21_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000312808, ENST00000480549, ENST00000505871, NM_024676, uc010oib.1, uc010oic.1_5end |
EntrezGene: | SH3D21 |
HGNC: | 26236 |
UniProt: | D6RD64A4FU49 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 4.45e-10 | 48 |
phagocyte | 4.45e-10 | 48 |
macrophage dendritic cell progenitor | 8.20e-10 | 61 |
myeloid leukocyte | 2.94e-09 | 72 |
monopoietic cell | 6.83e-09 | 59 |
monocyte | 6.83e-09 | 59 |
monoblast | 6.83e-09 | 59 |
promonocyte | 6.83e-09 | 59 |
granulocyte monocyte progenitor cell | 2.02e-08 | 67 |
classical monocyte | 8.69e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.69e-08 | 42 |
myeloid lineage restricted progenitor cell | 5.81e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
neural tube | 2.28e-11 | 56 |
neural rod | 2.28e-11 | 56 |
future spinal cord | 2.28e-11 | 56 |
neural keel | 2.28e-11 | 56 |
regional part of nervous system | 3.34e-11 | 53 |
regional part of brain | 3.34e-11 | 53 |
neural plate | 3.94e-10 | 82 |
presumptive neural plate | 3.94e-10 | 82 |
neurectoderm | 4.99e-10 | 86 |
central nervous system | 2.11e-09 | 81 |
brain | 2.75e-09 | 68 |
future brain | 2.75e-09 | 68 |
nervous system | 4.91e-09 | 89 |
cerebral hemisphere | 5.86e-09 | 32 |
regional part of forebrain | 8.42e-09 | 41 |
forebrain | 8.42e-09 | 41 |
anterior neural tube | 8.42e-09 | 41 |
future forebrain | 8.42e-09 | 41 |
brain grey matter | 1.12e-08 | 34 |
gray matter | 1.12e-08 | 34 |
telencephalon | 2.01e-08 | 34 |
pre-chordal neural plate | 2.65e-08 | 61 |
regional part of telencephalon | 3.55e-08 | 32 |
regional part of cerebral cortex | 5.69e-08 | 22 |
ecto-epithelium | 1.13e-07 | 104 |
neocortex | 1.97e-07 | 20 |
cerebral cortex | 2.27e-07 | 25 |
pallium | 2.27e-07 | 25 |