FFCP PHASE1:Hg19::chr22:29138386..29138405,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr22:29138386..29138405,-
|short_description=p2@CHEK2
|description=CAGE_peak_2_at_CHEK2_5end
|association_with_transcript=4bp_to_ENST00000416671,ENST0000054477...") |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=11200 | |EntrezGene=11200 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16627 | |HGNC=16627 | ||
|TSSclassifier=strong | |||
|UniProt=E7EPP1,Q9HBS5 | |UniProt=E7EPP1,Q9HBS5 | ||
|association_with_transcript=4bp_to_ENST00000416671,ENST00000544772_5end | |||
|cluster_id=chr22:29138386..29138405,- | |||
|description=CAGE_peak_2_at_CHEK2_5end | |||
|id=chr22:29138386..29138405,- | |||
|ontology_enrichment_celltype=CL:0000838!1.07e-09!52;CL:0000542!2.89e-09!53;CL:0000051!2.89e-09!53;CL:0000003!3.98e-08!722;CL:0000791!5.71e-08!18;CL:0000789!5.71e-08!18;CL:0002420!5.71e-08!18;CL:0002419!5.71e-08!18;CL:0000790!5.71e-08!18;CL:0000144!5.97e-08!625;CL:0000084!2.97e-07!25;CL:0000827!2.97e-07!25;CL:0002371!4.42e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.82e-09;18!CL:0000789;1.82e-09;18!CL:0002419;1.82e-09;18!CL:0000084;1.07e-08;25!CL:0000624;6.36e-08;6!CL:0000542;3.00e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.11e-10,52;CL:0000542,7.06e-10,53;CL:0000051,7.06e-10,53;CL:0000791,8.27e-10,18;CL:0000789,8.27e-10,18;CL:0002420,8.27e-10,18;CL:0002419,8.27e-10,18;CL:0000790,8.27e-10,18;CL:0000084,8.61e-09,25;CL:0000827,8.61e-09,25;CL:0000624,3.83e-08,6 | |||
|ontology_enrichment_development_v019=CL:0000790;1.82e-09;18!CL:0000051;3.00e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,1.84e-07,42;UBERON:0003509,1.84e-07,42;UBERON:0004572,1.84e-07,42;UBERON:0004573,7.57e-07,33;UBERON:0004571,7.57e-07,33 | |||
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| ||
|short_description=p2@CHEK2 | |||
}} | }} |
Latest revision as of 14:39, 19 September 2015
Short description: | p2@CHEK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CHEK2_5end |
Coexpression cluster: | NA |
Association with transcript: | 4bp_to_ENST00000416671, ENST00000544772_5end |
EntrezGene: | CHEK2 |
HGNC: | 16627 |
UniProt: | E7EPP1Q9HBS5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.11e-10 | 52 |
lymphocyte | 7.06e-10 | 53 |
common lymphoid progenitor | 7.06e-10 | 53 |
mature alpha-beta T cell | 8.27e-10 | 18 |
alpha-beta T cell | 8.27e-10 | 18 |
immature T cell | 8.27e-10 | 18 |
mature T cell | 8.27e-10 | 18 |
immature alpha-beta T cell | 8.27e-10 | 18 |
T cell | 8.61e-09 | 25 |
pro-T cell | 8.61e-09 | 25 |
CD4-positive, alpha-beta T cell | 3.83e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
artery | 1.84e-07 | 42 |
arterial blood vessel | 1.84e-07 | 42 |
arterial system | 1.84e-07 | 42 |
systemic artery | 7.57e-07 | 33 |
systemic arterial system | 7.57e-07 | 33 |