FFCP PHASE1:Hg19::chr7:17980095..17980136,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23161 | |EntrezGene=23161 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21335 | |HGNC=21335 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y5W8,Q9NSH0,F8WB11,Q86XC4 | |UniProt=Q9Y5W8,Q9NSH0,F8WB11,Q86XC4 | ||
|association_with_transcript=0bp_to_ENST00000242044,ENST00000409604,ENST00000428135,ENST00000444712,ENST00000471744,ENST00000474067,ENST00000475800,NM_015132,uc003stv.2,uc003stw.1,uc003stx.1,uc003sty.2,uc010kuc.2_5end | |association_with_transcript=0bp_to_ENST00000242044,ENST00000409604,ENST00000428135,ENST00000444712,ENST00000471744,ENST00000474067,ENST00000475800,NM_015132,uc003stv.2,uc003stw.1,uc003stx.1,uc003sty.2,uc010kuc.2_5end | ||
|cluster_id=chr7:17980095..17980136,- | |||
|description=CAGE_peak_1_at_SNX13_5end | |description=CAGE_peak_1_at_SNX13_5end | ||
|id=chr7:17980095..17980136,- | |id=chr7:17980095..17980136,- | ||
|ontology_enrichment_celltype=CL:0000766!1.17e-11!76;CL:0000557!1.14e-10!71;CL:0000839!1.26e-10!70;CL:0002009!6.65e-10!65;CL:0002194!2.03e-09!63;CL:0000576!2.03e-09!63;CL:0000040!2.03e-09!63;CL:0000559!2.03e-09!63;CL:0000738!4.59e-09!140;CL:0002031!1.22e-08!124;CL:0002057!1.57e-08!42;CL:0002087!1.55e-07!119;CL:0000860!2.07e-07!45 | |ontology_enrichment_celltype=CL:0000766!1.17e-11!76;CL:0000557!1.14e-10!71;CL:0000839!1.26e-10!70;CL:0002009!6.65e-10!65;CL:0002194!2.03e-09!63;CL:0000576!2.03e-09!63;CL:0000040!2.03e-09!63;CL:0000559!2.03e-09!63;CL:0000738!4.59e-09!140;CL:0002031!1.22e-08!124;CL:0002057!1.57e-08!42;CL:0002087!1.55e-07!119;CL:0000860!2.07e-07!45 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.25e-08;33!CL:0002057;2.25e-08;33!CL:0000473;3.78e-08;39!CL:0000234;3.78e-08;39 | |ontology_enrichment_celltype_v019=CL:0000860;2.25e-08;33!CL:0002057;2.25e-08;33!CL:0000473;3.78e-08;39!CL:0000234;3.78e-08;39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000766,8.85e-13,72;CL:0000557,9.07e-12,67;CL:0000839,9.79e-12,66;CL:0002009,5.18e-11,61;CL:0002194,1.66e-10,59;CL:0000576,1.66e-10,59;CL:0000040,1.66e-10,59;CL:0000559,1.66e-10,59;CL:0000738,1.20e-09,136;CL:0000473,1.54e-09,48;CL:0000234,1.54e-09,48;CL:0002031,2.97e-09,120;CL:0000860,1.57e-08,42;CL:0002057,1.57e-08,42;CL:0002087,4.21e-08,115 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.44e-08;82 | |ontology_enrichment_development_v019=UBERON:0006601;3.44e-08;82 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.39e-41!115;UBERON:0001049!7.43e-17!57;UBERON:0005068!7.43e-17!57;UBERON:0006241!7.43e-17!57;UBERON:0007135!7.43e-17!57;UBERON:0003080!6.72e-15!42;UBERON:0002780!2.21e-14!41;UBERON:0001890!2.21e-14!41;UBERON:0006240!2.21e-14!41;UBERON:0001017!5.44e-14!82;UBERON:0000073!6.71e-14!94;UBERON:0001016!6.71e-14!94;UBERON:0002616!1.21e-13!59;UBERON:0000955!2.75e-13!69;UBERON:0006238!2.75e-13!69;UBERON:0005743!5.66e-13!86;UBERON:0002390!1.08e-12!102;UBERON:0003061!1.08e-12!102;UBERON:0001893!5.72e-12!34;UBERON:0002020!8.71e-12!34;UBERON:0003528!8.71e-12!34;UBERON:0002791!1.42e-11!33;UBERON:0001869!2.07e-11!32;UBERON:0002193!2.36e-10!112;UBERON:0002619!2.60e-10!22;UBERON:0001950!1.96e-09!20;UBERON:0002346!4.73e-09!90;UBERON:0000956!1.05e-08!25;UBERON:0000203!1.05e-08!25;UBERON:0003075!1.13e-08!86;UBERON:0007284!1.13e-08!86;UBERON:0000062!1.97e-08!511;UBERON:0002371!2.45e-08!80;UBERON:0001474!3.65e-08!86;UBERON:0000153!2.16e-07!129;UBERON:0007811!2.16e-07!129;UBERON:0000924!4.43e-07!173;UBERON:0006601!4.43e-07!173;UBERON:0004765!4.55e-07!101;UBERON:0001434!4.55e-07!101;UBERON:0004121!9.76e-07!169 | |ontology_enrichment_uberon=UBERON:0007023!3.39e-41!115;UBERON:0001049!7.43e-17!57;UBERON:0005068!7.43e-17!57;UBERON:0006241!7.43e-17!57;UBERON:0007135!7.43e-17!57;UBERON:0003080!6.72e-15!42;UBERON:0002780!2.21e-14!41;UBERON:0001890!2.21e-14!41;UBERON:0006240!2.21e-14!41;UBERON:0001017!5.44e-14!82;UBERON:0000073!6.71e-14!94;UBERON:0001016!6.71e-14!94;UBERON:0002616!1.21e-13!59;UBERON:0000955!2.75e-13!69;UBERON:0006238!2.75e-13!69;UBERON:0005743!5.66e-13!86;UBERON:0002390!1.08e-12!102;UBERON:0003061!1.08e-12!102;UBERON:0001893!5.72e-12!34;UBERON:0002020!8.71e-12!34;UBERON:0003528!8.71e-12!34;UBERON:0002791!1.42e-11!33;UBERON:0001869!2.07e-11!32;UBERON:0002193!2.36e-10!112;UBERON:0002619!2.60e-10!22;UBERON:0001950!1.96e-09!20;UBERON:0002346!4.73e-09!90;UBERON:0000956!1.05e-08!25;UBERON:0000203!1.05e-08!25;UBERON:0003075!1.13e-08!86;UBERON:0007284!1.13e-08!86;UBERON:0000062!1.97e-08!511;UBERON:0002371!2.45e-08!80;UBERON:0001474!3.65e-08!86;UBERON:0000153!2.16e-07!129;UBERON:0007811!2.16e-07!129;UBERON:0000924!4.43e-07!173;UBERON:0006601!4.43e-07!173;UBERON:0004765!4.55e-07!101;UBERON:0001434!4.55e-07!101;UBERON:0004121!9.76e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.01e-11;114!UBERON:0002780;5.13e-11;41!UBERON:0001890;5.13e-11;41!UBERON:0001869;1.59e-10;32!UBERON:0002791;1.89e-10;32!UBERON:0002619;2.51e-10;22!UBERON:0001893;3.21e-10;34!UBERON:0003528;3.41e-10;34!UBERON:0002020;3.41e-10;34!UBERON:0001950;1.92e-09;20!UBERON:0000073;4.77e-09;53!UBERON:0002616;4.77e-09;53!UBERON:0000956;9.82e-09;25!UBERON:0000203;9.82e-09;25!UBERON:0001016;6.02e-07;83 | |ontology_enrichment_uberon_v019=UBERON:0007023;1.01e-11;114!UBERON:0002780;5.13e-11;41!UBERON:0001890;5.13e-11;41!UBERON:0001869;1.59e-10;32!UBERON:0002791;1.89e-10;32!UBERON:0002619;2.51e-10;22!UBERON:0001893;3.21e-10;34!UBERON:0003528;3.41e-10;34!UBERON:0002020;3.41e-10;34!UBERON:0001950;1.92e-09;20!UBERON:0000073;4.77e-09;53!UBERON:0002616;4.77e-09;53!UBERON:0000956;9.82e-09;25!UBERON:0000203;9.82e-09;25!UBERON:0001016;6.02e-07;83 | ||
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|short_description=p1@SNX13 | |short_description=p1@SNX13 | ||
}} | }} |
Latest revision as of 13:54, 17 September 2015
Short description: | p1@SNX13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SNX13_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000242044, ENST00000409604, ENST00000428135, ENST00000444712, ENST00000471744, ENST00000474067, ENST00000475800, NM_015132, uc003stv.2, uc003stw.1, uc003stx.1, uc003sty.2, uc010kuc.2_5end |
EntrezGene: | SNX13 |
HGNC: | 21335 |
UniProt: | Q9Y5W8Q9NSH0F8WB11Q86XC4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 8.85e-13 | 72 |
granulocyte monocyte progenitor cell | 9.07e-12 | 67 |
myeloid lineage restricted progenitor cell | 9.79e-12 | 66 |
macrophage dendritic cell progenitor | 5.18e-11 | 61 |
monopoietic cell | 1.66e-10 | 59 |
monocyte | 1.66e-10 | 59 |
monoblast | 1.66e-10 | 59 |
promonocyte | 1.66e-10 | 59 |
leukocyte | 1.20e-09 | 136 |
defensive cell | 1.54e-09 | 48 |
phagocyte | 1.54e-09 | 48 |
hematopoietic lineage restricted progenitor cell | 2.97e-09 | 120 |
classical monocyte | 1.57e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.57e-08 | 42 |
nongranular leukocyte | 4.21e-08 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.19e-41 | 114 |
neural tube | 2.39e-16 | 56 |
neural rod | 2.39e-16 | 56 |
future spinal cord | 2.39e-16 | 56 |
neural keel | 2.39e-16 | 56 |
regional part of nervous system | 7.46e-15 | 53 |
regional part of brain | 7.46e-15 | 53 |
nervous system | 1.87e-14 | 89 |
regional part of forebrain | 2.21e-14 | 41 |
forebrain | 2.21e-14 | 41 |
anterior neural tube | 2.21e-14 | 41 |
future forebrain | 2.21e-14 | 41 |
hematopoietic system | 1.20e-13 | 98 |
blood island | 1.20e-13 | 98 |
central nervous system | 1.50e-13 | 81 |
brain | 7.75e-13 | 68 |
future brain | 7.75e-13 | 68 |
telencephalon | 5.72e-12 | 34 |
brain grey matter | 8.71e-12 | 34 |
gray matter | 8.71e-12 | 34 |
cerebral hemisphere | 2.07e-11 | 32 |
regional part of telencephalon | 2.83e-11 | 32 |
hemolymphoid system | 4.12e-11 | 108 |
regional part of cerebral cortex | 2.60e-10 | 22 |
neocortex | 1.96e-09 | 20 |
bone marrow | 3.73e-09 | 76 |
organ system subdivision | 4.21e-09 | 223 |
bone element | 6.31e-09 | 82 |
cerebral cortex | 1.05e-08 | 25 |
pallium | 1.05e-08 | 25 |
neurectoderm | 3.22e-08 | 86 |
neural plate | 7.64e-08 | 82 |
presumptive neural plate | 7.64e-08 | 82 |
skeletal element | 1.01e-07 | 90 |
immune system | 1.68e-07 | 93 |
skeletal system | 2.44e-07 | 100 |