FFCP PHASE1:Hg19::chrX:152771377..152771404,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=633 | |EntrezGene=633 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1044 | |HGNC=1044 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=50bp_to_ENST00000492658_5end | |association_with_transcript=50bp_to_ENST00000492658_5end | ||
|cluster_id=chrX:152771377..152771404,+ | |||
|coexpression_cluster_id=C288 | |coexpression_cluster_id=C288 | ||
|description=CAGE_peak_14_at_BGN_5end | |description=CAGE_peak_14_at_BGN_5end | ||
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|ontology_enrichment_celltype=CL:0000055!1.25e-22!180;CL:0000057!9.34e-13!75;CL:0000359!5.91e-12!32;CL:0000187!8.14e-12!54;CL:0000183!1.20e-11!59;CL:0000680!4.05e-11!57;CL:0000056!4.05e-11!57;CL:0000355!4.05e-11!57;CL:0000222!4.82e-11!119;CL:0000393!1.40e-10!60;CL:0000211!1.40e-10!60;CL:0000192!6.35e-09!42;CL:0000514!6.35e-09!42;CL:0002494!2.66e-08!16;CL:0002334!3.09e-07!12;CL:0000327!6.77e-07!14 | |ontology_enrichment_celltype=CL:0000055!1.25e-22!180;CL:0000057!9.34e-13!75;CL:0000359!5.91e-12!32;CL:0000187!8.14e-12!54;CL:0000183!1.20e-11!59;CL:0000680!4.05e-11!57;CL:0000056!4.05e-11!57;CL:0000355!4.05e-11!57;CL:0000222!4.82e-11!119;CL:0000393!1.40e-10!60;CL:0000211!1.40e-10!60;CL:0000192!6.35e-09!42;CL:0000514!6.35e-09!42;CL:0002494!2.66e-08!16;CL:0002334!3.09e-07!12;CL:0000327!6.77e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000327;2.75e-10;15!CL:0000359;3.57e-09;32!CL:0000499;3.62e-08;28!CL:0002620;9.84e-08;23!CL:0002570;2.28e-07;8!CL:0000153;4.91e-07;9!CL:0000447;4.91e-07;9!CL:0002334;6.62e-07;12 | |ontology_enrichment_celltype_v019=CL:0000327;2.75e-10;15!CL:0000359;3.57e-09;32!CL:0000499;3.62e-08;28!CL:0002620;9.84e-08;23!CL:0002570;2.28e-07;8!CL:0000153;4.91e-07;9!CL:0000447;4.91e-07;9!CL:0002334;6.62e-07;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.18e-13,76;CL:0000327,1.76e-10,15;CL:0000359,2.68e-09,32;CL:0000499,2.47e-08,28;CL:0002620,1.08e-07,23;CL:0000153,3.88e-07,9;CL:0000447,3.88e-07,9;CL:0002570,4.13e-07,8;CL:0002334,4.45e-07,12 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001637;5.22e-11;42!UBERON:0003509;5.22e-11;42!UBERON:0004572;5.22e-11;42!UBERON:0004573;5.96e-10;33!UBERON:0004571;5.96e-10;33 | |ontology_enrichment_uberon_v019=UBERON:0001637;5.22e-11;42!UBERON:0003509;5.22e-11;42!UBERON:0004572;5.22e-11;42!UBERON:0004573;5.96e-10;33!UBERON:0004571;5.96e-10;33 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,2.70e-19,83;UBERON:0007500,5.17e-15,59;UBERON:0001981,5.17e-15,59;UBERON:0004537,5.17e-15,59;UBERON:0006965,5.17e-15,59;UBERON:0002049,5.44e-15,78;UBERON:0007798,5.44e-15,78;UBERON:0000055,1.84e-14,68;UBERON:0004535,4.67e-14,109;UBERON:0001637,1.72e-13,42;UBERON:0003509,1.72e-13,42;UBERON:0004572,1.72e-13,42;UBERON:0001009,2.74e-13,112;UBERON:0003914,1.52e-12,117;UBERON:0004573,9.57e-11,33;UBERON:0004571,9.57e-11,33;UBERON:0000948,2.67e-07,24;UBERON:0005498,2.67e-07,24;UBERON:0004140,2.67e-07,24;UBERON:0009881,2.67e-07,24;UBERON:0004141,2.67e-07,24;UBERON:0003084,2.67e-07,24;UBERON:0007005,2.67e-07,24;UBERON:0004139,2.67e-07,24;UBERON:0004291,2.67e-07,24;UBERON:0004797,5.19e-07,7 | |||
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| ||
|short_description=p14@BGN | |short_description=p14@BGN | ||
}} | }} |
Latest revision as of 23:47, 19 September 2015
Short description: | p14@BGN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_BGN_5end |
Coexpression cluster: | C288_Chondrocyte_Renal_Pericytes_Fibroblast_aorta_Smooth_Meningeal |
Association with transcript: | 50bp_to_ENST00000492658_5end |
EntrezGene: | BGN |
HGNC: | 1044 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.18e-13 | 76 |
extracellular matrix secreting cell | 1.76e-10 | 15 |
vascular associated smooth muscle cell | 2.68e-09 | 32 |
stromal cell | 2.47e-08 | 28 |
skin fibroblast | 1.08e-07 | 23 |
GAG secreting cell | 3.88e-07 | 9 |
carbohydrate secreting cell | 3.88e-07 | 9 |
mesenchymal stem cell of adipose | 4.13e-07 | 8 |
preadipocyte | 4.45e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
splanchnic layer of lateral plate mesoderm | 2.70e-19 | 83 |
epithelial tube open at both ends | 5.17e-15 | 59 |
blood vessel | 5.17e-15 | 59 |
blood vasculature | 5.17e-15 | 59 |
vascular cord | 5.17e-15 | 59 |
vasculature | 5.44e-15 | 78 |
vascular system | 5.44e-15 | 78 |
vessel | 1.84e-14 | 68 |
cardiovascular system | 4.67e-14 | 109 |
artery | 1.72e-13 | 42 |
arterial blood vessel | 1.72e-13 | 42 |
arterial system | 1.72e-13 | 42 |
circulatory system | 2.74e-13 | 112 |
epithelial tube | 1.52e-12 | 117 |
systemic artery | 9.57e-11 | 33 |
systemic arterial system | 9.57e-11 | 33 |
heart | 2.67e-07 | 24 |
primitive heart tube | 2.67e-07 | 24 |
primary heart field | 2.67e-07 | 24 |
anterior lateral plate mesoderm | 2.67e-07 | 24 |
heart tube | 2.67e-07 | 24 |
heart primordium | 2.67e-07 | 24 |
cardiac mesoderm | 2.67e-07 | 24 |
cardiogenic plate | 2.67e-07 | 24 |
heart rudiment | 2.67e-07 | 24 |
blood vessel layer | 5.19e-07 | 7 |