FFCP PHASE1:Hg19::chr4:103422076..103422117,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4790 | |EntrezGene=4790 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7794 | |HGNC=7794 | ||
|TSSclassifier=strong | |||
|UniProt=P19838 | |UniProt=P19838 | ||
|association_with_transcript=-368bp_to_ENST00000226574,NM_001165412,NM_003998,uc011cep.1,uc011ceq.1_5end | |association_with_transcript=-368bp_to_ENST00000226574,NM_001165412,NM_003998,uc011cep.1,uc011ceq.1_5end | ||
|cluster_id=chr4:103422076..103422117,+ | |||
|description=CAGE_peak_5_at_NFKB1_5end | |description=CAGE_peak_5_at_NFKB1_5end | ||
|id=chr4:103422076..103422117,+ | |id=chr4:103422076..103422117,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.35e-24!115;UBERON:0000153!5.09e-13!129;UBERON:0007811!5.09e-13!129;UBERON:0000475!2.12e-12!365;UBERON:0000033!4.06e-12!123;UBERON:0000073!1.83e-11!94;UBERON:0001016!1.83e-11!94;UBERON:0004121!2.34e-11!169;UBERON:0000924!4.28e-11!173;UBERON:0006601!4.28e-11!173;UBERON:0001049!6.02e-11!57;UBERON:0005068!6.02e-11!57;UBERON:0006241!6.02e-11!57;UBERON:0007135!6.02e-11!57;UBERON:0000955!6.53e-11!69;UBERON:0006238!6.53e-11!69;UBERON:0005743!7.71e-11!86;UBERON:0002616!2.58e-10!59;UBERON:0001017!5.51e-10!82;UBERON:0003075!7.66e-10!86;UBERON:0007284!7.66e-10!86;UBERON:0002346!2.08e-09!90;UBERON:0000481!4.79e-08!347;UBERON:0003076!6.11e-07!15;UBERON:0003057!6.11e-07!15;UBERON:0004732!6.62e-07!13;UBERON:0000161!9.98e-07!35 | |ontology_enrichment_uberon=UBERON:0007023!2.35e-24!115;UBERON:0000153!5.09e-13!129;UBERON:0007811!5.09e-13!129;UBERON:0000475!2.12e-12!365;UBERON:0000033!4.06e-12!123;UBERON:0000073!1.83e-11!94;UBERON:0001016!1.83e-11!94;UBERON:0004121!2.34e-11!169;UBERON:0000924!4.28e-11!173;UBERON:0006601!4.28e-11!173;UBERON:0001049!6.02e-11!57;UBERON:0005068!6.02e-11!57;UBERON:0006241!6.02e-11!57;UBERON:0007135!6.02e-11!57;UBERON:0000955!6.53e-11!69;UBERON:0006238!6.53e-11!69;UBERON:0005743!7.71e-11!86;UBERON:0002616!2.58e-10!59;UBERON:0001017!5.51e-10!82;UBERON:0003075!7.66e-10!86;UBERON:0007284!7.66e-10!86;UBERON:0002346!2.08e-09!90;UBERON:0000481!4.79e-08!347;UBERON:0003076!6.11e-07!15;UBERON:0003057!6.11e-07!15;UBERON:0004732!6.62e-07!13;UBERON:0000161!9.98e-07!35 | ||
|ontology_enrichment_uberon_v019=UBERON:0004732;4.48e-09;13!UBERON:0004733;5.96e-08;12!UBERON:0002028;5.96e-08;12!UBERON:0007023;1.00e-07;114 | |ontology_enrichment_uberon_v019=UBERON:0004732;4.48e-09;13!UBERON:0004733;5.96e-08;12!UBERON:0002028;5.96e-08;12!UBERON:0007023;1.00e-07;114 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.63e-29,114;UBERON:0000955,4.16e-10,68;UBERON:0006238,4.16e-10,68;UBERON:0003075,4.42e-10,82;UBERON:0007284,4.42e-10,82;UBERON:0000073,5.76e-10,53;UBERON:0002616,5.76e-10,53;UBERON:0001049,7.68e-10,56;UBERON:0005068,7.68e-10,56;UBERON:0006241,7.68e-10,56;UBERON:0007135,7.68e-10,56;UBERON:0004732,3.76e-09,13;UBERON:0010371,3.87e-09,104;UBERON:0002346,4.09e-09,86;UBERON:0004121,4.73e-09,171;UBERON:0000924,4.73e-09,171;UBERON:0006601,4.73e-09,171;UBERON:0010314,1.39e-08,132;UBERON:0004733,4.91e-08,12;UBERON:0002028,4.91e-08,12;UBERON:0007277,4.91e-08,12;UBERON:0001017,1.19e-07,81;UBERON:0001016,3.13e-07,89;UBERON:0003076,3.25e-07,15;UBERON:0003057,3.25e-07,15;UBERON:0011216,9.73e-07,223 | |||
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| ||
|short_description=p5@NFKB1 | |short_description=p5@NFKB1 | ||
}} | }} |
Latest revision as of 03:50, 20 September 2015
Short description: | p5@NFKB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_NFKB1_5end |
Coexpression cluster: | NA |
Association with transcript: | -368bp_to_ENST00000226574, NM_001165412, NM_003998, uc011cep.1, uc011ceq.1_5end |
EntrezGene: | NFKB1 |
HGNC: | 7794 |
UniProt: | P19838 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.63e-29 | 114 |
brain | 4.16e-10 | 68 |
future brain | 4.16e-10 | 68 |
neural plate | 4.42e-10 | 82 |
presumptive neural plate | 4.42e-10 | 82 |
regional part of nervous system | 5.76e-10 | 53 |
regional part of brain | 5.76e-10 | 53 |
neural tube | 7.68e-10 | 56 |
neural rod | 7.68e-10 | 56 |
future spinal cord | 7.68e-10 | 56 |
neural keel | 7.68e-10 | 56 |
segmental subdivision of nervous system | 3.76e-09 | 13 |
ecto-epithelium | 3.87e-09 | 104 |
neurectoderm | 4.09e-09 | 86 |
ectoderm-derived structure | 4.73e-09 | 171 |
ectoderm | 4.73e-09 | 171 |
presumptive ectoderm | 4.73e-09 | 171 |
structure with developmental contribution from neural crest | 1.39e-08 | 132 |
segmental subdivision of hindbrain | 4.91e-08 | 12 |
hindbrain | 4.91e-08 | 12 |
presumptive hindbrain | 4.91e-08 | 12 |
central nervous system | 1.19e-07 | 81 |
nervous system | 3.13e-07 | 89 |
posterior neural tube | 3.25e-07 | 15 |
chordal neural plate | 3.25e-07 | 15 |
organ system subdivision | 9.73e-07 | 223 |