FFCP PHASE1:Hg19::chr16:85617044..85617059,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:85617044..85617059,- | |||
|coexpression_cluster_id=C139 | |coexpression_cluster_id=C139 | ||
|description=CAGE_peak_at_chr16:85617044..85617059,- | |description=CAGE_peak_at_chr16:85617044..85617059,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000128!3.56e-15!7;CL:0000126!3.56e-15!7;CL:0000127!3.56e-15!7;CL:0002453!3.56e-15!7;CL:0002605!2.20e-13!3;CL:0000133!3.43e-12!59;CL:0000333!9.54e-12!41;CL:0000221!3.66e-11!71;CL:0002559!7.73e-11!4;CL:0000095!6.02e-10!17;CL:0000123!6.02e-10!17;CL:0000243!2.18e-08!15;CL:0000125!2.18e-08!15;CL:0000030!2.18e-08!15;CL:0000339!2.18e-08!15;CL:0000346!3.97e-07!3;CL:1000428!3.97e-07!3;CL:0000710!5.91e-07!20;CL:0002077!7.05e-07!33;CL:0000075!8.78e-07!27 | |ontology_enrichment_celltype=CL:0000128!3.56e-15!7;CL:0000126!3.56e-15!7;CL:0000127!3.56e-15!7;CL:0002453!3.56e-15!7;CL:0002605!2.20e-13!3;CL:0000133!3.43e-12!59;CL:0000333!9.54e-12!41;CL:0000221!3.66e-11!71;CL:0002559!7.73e-11!4;CL:0000095!6.02e-10!17;CL:0000123!6.02e-10!17;CL:0000243!2.18e-08!15;CL:0000125!2.18e-08!15;CL:0000030!2.18e-08!15;CL:0000339!2.18e-08!15;CL:0000346!3.97e-07!3;CL:1000428!3.97e-07!3;CL:0000710!5.91e-07!20;CL:0002077!7.05e-07!33;CL:0000075!8.78e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0000346;1.91e-44;3!CL:1000428;1.91e-44;3!CL:0002559;3.55e-27;5!CL:0000306;1.22e-09;4!CL:0002222;1.22e-09;4!CL:0002224;1.22e-09;4!CL:0002569;8.72e-07;6 | |ontology_enrichment_celltype_v019=CL:0000346;1.91e-44;3!CL:1000428;1.91e-44;3!CL:0002559;3.55e-27;5!CL:0000306;1.22e-09;4!CL:0002222;1.22e-09;4!CL:0002224;1.22e-09;4!CL:0002569;8.72e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000346,1.22e-44,3;CL:1000428,1.22e-44,3;CL:0002559,2.72e-27,5;CL:0000306,1.22e-09,4;CL:0002222,1.22e-09,4;CL:0002224,1.22e-09,4;CL:0000333,1.11e-07,41;CL:0002569,8.97e-07,6 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:17!2.04e-08!5;DOID:450!2.04e-08!5;DOID:66!2.04e-08!5;DOID:423!2.04e-08!5;DOID:0080000!2.04e-08!5;DOID:11722!2.04e-08!5 | |ontology_enrichment_disease=DOID:17!2.04e-08!5;DOID:450!2.04e-08!5;DOID:66!2.04e-08!5;DOID:423!2.04e-08!5;DOID:0080000!2.04e-08!5;DOID:11722!2.04e-08!5 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002073!7.73e-11!4;UBERON:0005086!7.73e-11!4;UBERON:0002097!5.63e-09!40;UBERON:0002199!9.08e-08!45;UBERON:0002416!9.08e-08!45;UBERON:0000412!3.97e-07!3;UBERON:0001992!3.97e-07!3 | |ontology_enrichment_uberon=UBERON:0002073!7.73e-11!4;UBERON:0005086!7.73e-11!4;UBERON:0002097!5.63e-09!40;UBERON:0002199!9.08e-08!45;UBERON:0002416!9.08e-08!45;UBERON:0000412!3.97e-07!3;UBERON:0001992!3.97e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0000412;1.91e-44;3!UBERON:0001992;1.91e-44;3!UBERON:0002073;3.55e-27;5!UBERON:0002067;1.31e-15;9!UBERON:0010371;3.95e-10;31!UBERON:0001003;8.85e-10;15!UBERON:0007376;8.85e-10;15!UBERON:0010077;1.22e-09;4!UBERON:0005389;1.22e-09;4!UBERON:0000484;1.22e-09;4!UBERON:0000965;1.22e-09;4!UBERON:0001803;1.22e-09;4!UBERON:0003422;8.72e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0000412;1.91e-44;3!UBERON:0001992;1.91e-44;3!UBERON:0002073;3.55e-27;5!UBERON:0002067;1.31e-15;9!UBERON:0010371;3.95e-10;31!UBERON:0001003;8.85e-10;15!UBERON:0007376;8.85e-10;15!UBERON:0010077;1.22e-09;4!UBERON:0005389;1.22e-09;4!UBERON:0000484;1.22e-09;4!UBERON:0000965;1.22e-09;4!UBERON:0001803;1.22e-09;4!UBERON:0003422;8.72e-07;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000412,1.22e-44,3;UBERON:0001992,1.22e-44,3;UBERON:0002073,2.72e-27,5;UBERON:0005086,2.72e-27,5;UBERON:0002067,1.13e-15,9;UBERON:0004016,1.13e-15,9;UBERON:0010083,1.13e-15,9;UBERON:0005085,2.29e-10,31;UBERON:0001003,8.10e-10,15;UBERON:0007376,8.10e-10,15;UBERON:0007383,8.10e-10,15;UBERON:0010077,1.22e-09,4;UBERON:0005389,1.22e-09,4;UBERON:0000484,1.22e-09,4;UBERON:0002546,1.22e-09,4;UBERON:0000965,1.22e-09,4;UBERON:0001803,1.22e-09,4;UBERON:0003073,1.22e-09,4;UBERON:0005426,1.22e-09,4;UBERON:0003422,8.97e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0.123121058076788,0,0,0.286235987131057,0.410623275218653,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0.640672166455702,0.423863802319124,0,0.412210116953756,0,0,0,0,0,0.828449087780694,0,0,0.403008392910561,0.169560592310488,0,0,0,0,0,0,0.10366105501537,0,0,1.56449532329816,1.28648187638577,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.59384255422738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0.857479297891735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.473107245101804,0,0,0,0,0,0,0.347534457872331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.75894634753143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05836791361941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.40871879019824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.813689977576877,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785201868921944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0.546327859818478,0,0,0,0,0,0,0,0,0,0,0,0,0.124149428591716,0,0.12729431655633,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0.123121058076788,0,0,0.286235987131057,0.410623275218653,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0.640672166455702,0.423863802319124,0,0.412210116953756,0,0,0,0,0,0.828449087780694,0,0,0.403008392910561,0.169560592310488,0,0,0,0,0,0,0.10366105501537,0,0,1.56449532329816,1.28648187638577,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.59384255422738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0.857479297891735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.473107245101804,0,0,0,0,0,0,0.347534457872331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.75894634753143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05836791361941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.40871879019824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.813689977576877,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785201868921944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0.546327859818478,0,0,0,0,0,0,0,0,0,0,0,0,0.124149428591716,0,0.12729431655633,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr16:85617044..85617059,- | |short_description=p@chr16:85617044..85617059,- | ||
}} | }} |
Latest revision as of 13:00, 25 July 2015
Short description: | p@chr16:85617044..85617059, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:85617044..85617059, - |
Coexpression cluster: | C139_astrocytoma_skin_salivary_gall_serous_Mallassezderived_renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle dermal papilla cell | 1.22e-44 | 3 |
stem cell of epidermis | 1.22e-44 | 3 |
hair follicle cell | 2.72e-27 | 5 |
crystallin accumulating cell | 1.22e-09 | 4 |
vertebrate lens cell | 1.22e-09 | 4 |
lens epithelial cell | 1.22e-09 | 4 |
migratory neural crest cell | 1.11e-07 | 41 |
mesenchymal stem cell of umbilical cord | 8.97e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
dermal papilla | 1.22e-44 | 3 |
papillary layer of dermis | 1.22e-44 | 3 |
hair follicle | 2.72e-27 | 5 |
hair follicle placode | 2.72e-27 | 5 |
dermis | 1.13e-15 | 9 |
dermatome | 1.13e-15 | 9 |
future dermis | 1.13e-15 | 9 |
ectodermal placode | 2.29e-10 | 31 |
skin epidermis | 8.10e-10 | 15 |
outer epithelium | 8.10e-10 | 15 |
enveloping layer of ectoderm | 8.10e-10 | 15 |
cuboidal epithelium | 1.22e-09 | 4 |
transparent eye structure | 1.22e-09 | 4 |
simple cuboidal epithelium | 1.22e-09 | 4 |
cranial placode | 1.22e-09 | 4 |
lens of camera-type eye | 1.22e-09 | 4 |
epithelium of lens | 1.22e-09 | 4 |
lens placode | 1.22e-09 | 4 |
lens vesicle | 1.22e-09 | 4 |
mesenchyme of umbilical cord | 8.97e-07 | 6 |