FFCP PHASE1:Hg19::chr13:95131731..95131756,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1638 | |EntrezGene=1638 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2709 | |HGNC=2709 | ||
|TSSclassifier=strong | |||
|UniProt=P40126 | |UniProt=P40126 | ||
|association_with_transcript=166bp_to_ENST00000377028,ENST00000472871_5end | |association_with_transcript=166bp_to_ENST00000377028,ENST00000472871_5end | ||
|cluster_id=chr13:95131731..95131756,- | |||
|coexpression_cluster_id=C41 | |coexpression_cluster_id=C41 | ||
|description=CAGE_peak_3_at_DCT_5end | |description=CAGE_peak_3_at_DCT_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000147!1.83e-24!14;CL:0000148!8.98e-20!10;CL:0000541!8.98e-20!10;CL:0000325!2.69e-12!39;CL:0000133!8.75e-11!59;CL:0002274!3.51e-10!5;CL:0000457!3.51e-10!5;CL:0002191!3.51e-10!5;CL:0000097!3.51e-10!5;CL:0000831!3.51e-10!5;CL:0002028!3.51e-10!5;CL:0000221!3.63e-10!71;CL:0000710!1.36e-09!20;CL:0000075!3.29e-09!27;CL:0000333!4.49e-09!41;CL:0002586!2.20e-08!3;CL:0002077!2.32e-07!33;CL:0002566!5.26e-07!1;CL:0002319!6.81e-07!25;CL:0000047!9.65e-07!8 | |ontology_enrichment_celltype=CL:0000147!1.83e-24!14;CL:0000148!8.98e-20!10;CL:0000541!8.98e-20!10;CL:0000325!2.69e-12!39;CL:0000133!8.75e-11!59;CL:0002274!3.51e-10!5;CL:0000457!3.51e-10!5;CL:0002191!3.51e-10!5;CL:0000097!3.51e-10!5;CL:0000831!3.51e-10!5;CL:0002028!3.51e-10!5;CL:0000221!3.63e-10!71;CL:0000710!1.36e-09!20;CL:0000075!3.29e-09!27;CL:0000333!4.49e-09!41;CL:0002586!2.20e-08!3;CL:0002077!2.32e-07!33;CL:0002566!5.26e-07!1;CL:0002319!6.81e-07!25;CL:0000047!9.65e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000047;1.93e-33;2!CL:0000148;1.78e-26;10!CL:0000147;4.82e-19;14!CL:0002566;1.22e-17;1!CL:0000710;1.90e-13;20!CL:0002319;4.22e-10;25!CL:0000075;4.81e-10;27 | |ontology_enrichment_celltype_v019=CL:0000047;1.93e-33;2!CL:0000148;1.78e-26;10!CL:0000147;4.82e-19;14!CL:0002566;1.22e-17;1!CL:0000710;1.90e-13;20!CL:0002319;4.22e-10;25!CL:0000075;4.81e-10;27 | ||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.72e-26,10;CL:0000541,1.72e-26,10;CL:0000147,4.71e-19,14;CL:0002566,1.44e-17,1;CL:0000133,1.12e-16,59;CL:0000221,1.17e-13,72;CL:0000333,1.26e-13,41;CL:0000710,1.87e-13,20;CL:0002319,4.32e-10,25;CL:0000075,4.75e-10,27;CL:0000047,4.19e-09,8;CL:0002077,4.89e-08,34 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.88e-23;3!CL:0000133;2.83e-09;59!UBERON:0006238;5.31e-07;10 | |ontology_enrichment_development_v019=UBERON:0003056;1.88e-23;3!CL:0000133;2.83e-09;59!UBERON:0006238;5.31e-07;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1909;1.17e-09;2 | |ontology_enrichment_disease_v019=DOID:1909;1.17e-09;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,1.12e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0000966!1.43e-18!5;UBERON:0005388!1.43e-18!5;UBERON:0001802!1.43e-18!5;UBERON:0000970!1.26e-09!20;UBERON:0005743!2.81e-09!86;UBERON:0002104!3.87e-09!21;UBERON:0001781!2.20e-08!3;UBERON:0001782!2.20e-08!3;UBERON:0005424!2.20e-08!3;UBERON:0000020!2.73e-08!23;UBERON:0000073!3.72e-08!94;UBERON:0001016!3.72e-08!94;UBERON:0001032!6.42e-08!24;UBERON:0004456!6.42e-08!24;UBERON:0000019!3.61e-07!19;UBERON:0000047!3.61e-07!19;UBERON:0004088!3.61e-07!19;UBERON:0003072!3.61e-07!19;UBERON:0003071!3.61e-07!19;UBERON:0004128!3.61e-07!19;UBERON:0003056!5.40e-07!61;UBERON:0007029!5.89e-07!1;UBERON:0000989!7.39e-07!1;UBERON:0008811!7.39e-07!1;UBERON:0006258!7.39e-07!1;UBERON:0005876!7.39e-07!1;UBERON:0004874!7.39e-07!1 | |ontology_enrichment_uberon=UBERON:0000966!1.43e-18!5;UBERON:0005388!1.43e-18!5;UBERON:0001802!1.43e-18!5;UBERON:0000970!1.26e-09!20;UBERON:0005743!2.81e-09!86;UBERON:0002104!3.87e-09!21;UBERON:0001781!2.20e-08!3;UBERON:0001782!2.20e-08!3;UBERON:0005424!2.20e-08!3;UBERON:0000020!2.73e-08!23;UBERON:0000073!3.72e-08!94;UBERON:0001016!3.72e-08!94;UBERON:0001032!6.42e-08!24;UBERON:0004456!6.42e-08!24;UBERON:0000019!3.61e-07!19;UBERON:0000047!3.61e-07!19;UBERON:0004088!3.61e-07!19;UBERON:0003072!3.61e-07!19;UBERON:0003071!3.61e-07!19;UBERON:0004128!3.61e-07!19;UBERON:0003056!5.40e-07!61;UBERON:0007029!5.89e-07!1;UBERON:0000989!7.39e-07!1;UBERON:0008811!7.39e-07!1;UBERON:0006258!7.39e-07!1;UBERON:0005876!7.39e-07!1;UBERON:0004874!7.39e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.72e-14;5!UBERON:0005388;1.72e-14;5!UBERON:0001802;1.72e-14;5!UBERON:0000970;3.24e-08;20!UBERON:0002104;7.53e-08;21!UBERON:0000020;3.27e-07;23!UBERON:0001032;6.22e-07;24!UBERON:0004456;6.22e-07;24 | |ontology_enrichment_uberon_v019=UBERON:0000966;1.72e-14;5!UBERON:0005388;1.72e-14;5!UBERON:0001802;1.72e-14;5!UBERON:0000970;3.24e-08;20!UBERON:0002104;7.53e-08;21!UBERON:0000020;3.27e-07;23!UBERON:0001032;6.22e-07;24!UBERON:0004456;6.22e-07;24 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,3.08e-12,6;UBERON:0005388,3.08e-12,6;UBERON:0001802,3.08e-12,6;UBERON:0000970,7.53e-08,21;UBERON:0002104,7.53e-08,21;UBERON:0000020,6.22e-07,24;UBERON:0001032,6.22e-07,24;UBERON:0004456,6.22e-07,24 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2781333715647,0.414644220061482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.288239906833923,0.25248486685276,1.14296209725904,0.381988425558278,0,0,1.64523988325318,0,8.28896654628677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,1.30139853857622,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512900250232778,0,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0.142283686696828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,43.1623214890817,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,4.98055085770431,0,8.94729793495722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0.490696182767533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0.496211178389294,0,0,0,0.336283722218824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,145.740673576202,11.3769800447563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,10.1145275405795,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2781333715647,0.414644220061482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.288239906833923,0.25248486685276,1.14296209725904,0.381988425558278,0,0,1.64523988325318,0,8.28896654628677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,1.30139853857622,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512900250232778,0,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0.142283686696828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,43.1623214890817,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,4.98055085770431,0,8.94729793495722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0.490696182767533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0.496211178389294,0,0,0,0.336283722218824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,145.740673576202,11.3769800447563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,10.1145275405795,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@DCT | |short_description=p3@DCT | ||
}} | }} |
Latest revision as of 05:22, 18 September 2015
Short description: | p3@DCT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DCT_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | 166bp_to_ENST00000377028, ENST00000472871_5end |
EntrezGene: | DCT |
HGNC: | 2709 |
UniProt: | P40126 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.72e-26 | 10 |
melanoblast | 1.72e-26 | 10 |
pigment cell | 4.71e-19 | 14 |
dark melanocyte | 1.44e-17 | 1 |
neurectodermal cell | 1.12e-16 | 59 |
ectodermal cell | 1.17e-13 | 72 |
migratory neural crest cell | 1.26e-13 | 41 |
neurecto-epithelial cell | 1.87e-13 | 20 |
neural cell | 4.32e-10 | 25 |
columnar/cuboidal epithelial cell | 4.75e-10 | 27 |
neuronal stem cell | 4.19e-09 | 8 |
ecto-epithelial cell | 4.89e-08 | 34 |
Ontology term | p-value | n |
---|---|---|
retina | 3.08e-12 | 6 |
photoreceptor array | 3.08e-12 | 6 |
posterior segment of eyeball | 3.08e-12 | 6 |
eye | 7.53e-08 | 21 |
visual system | 7.53e-08 | 21 |
sense organ | 6.22e-07 | 24 |
sensory system | 6.22e-07 | 24 |
entire sense organ system | 6.22e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.12e-09 | 2 |