FFCP PHASE1:Hg19::chr4:43341835..43341849,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:43341835..43341849,+ | |||
|coexpression_cluster_id=C1401 | |coexpression_cluster_id=C1401 | ||
|description=CAGE_peak_at_chr4:43341835..43341849,+ | |description=CAGE_peak_at_chr4:43341835..43341849,+ | ||
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|ontology_enrichment_celltype=CL:0000055!1.12e-17!180;CL:0000680!1.77e-15!57;CL:0000056!1.77e-15!57;CL:0000355!1.77e-15!57;CL:0000187!6.99e-14!54;CL:0000188!2.55e-13!9;CL:0000183!2.93e-13!59;CL:0000393!8.24e-12!60;CL:0000211!8.24e-12!60;CL:0002570!9.26e-12!8;CL:0000057!1.64e-10!75;CL:0000048!9.96e-10!430;CL:0000723!2.58e-09!436;CL:0000034!8.75e-09!444;CL:0002620!3.76e-08!23;CL:0000192!1.69e-07!42;CL:0000514!1.69e-07!42;CL:0000548!7.47e-07!679;CL:0000004!7.47e-07!679;CL:0000255!7.47e-07!679 | |ontology_enrichment_celltype=CL:0000055!1.12e-17!180;CL:0000680!1.77e-15!57;CL:0000056!1.77e-15!57;CL:0000355!1.77e-15!57;CL:0000187!6.99e-14!54;CL:0000188!2.55e-13!9;CL:0000183!2.93e-13!59;CL:0000393!8.24e-12!60;CL:0000211!8.24e-12!60;CL:0002570!9.26e-12!8;CL:0000057!1.64e-10!75;CL:0000048!9.96e-10!430;CL:0000723!2.58e-09!436;CL:0000034!8.75e-09!444;CL:0002620!3.76e-08!23;CL:0000192!1.69e-07!42;CL:0000514!1.69e-07!42;CL:0000548!7.47e-07!679;CL:0000004!7.47e-07!679;CL:0000255!7.47e-07!679 | ||
|ontology_enrichment_celltype_v019=CL:0000188;2.76e-16;9!CL:0002601;6.73e-11;1!CL:0000228;2.62e-10;1!CL:0002372;2.62e-10;1 | |ontology_enrichment_celltype_v019=CL:0000188;2.76e-16;9!CL:0002601;6.73e-11;1!CL:0000228;2.62e-10;1!CL:0002372;2.62e-10;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000188,3.79e-16,9;CL:0002601,6.73e-11,1;CL:0000228,2.50e-10,1;CL:0002372,2.50e-10,1;CL:0000187,2.38e-07,55;CL:0000680,6.24e-07,58;CL:0000056,6.24e-07,58;CL:0000355,6.24e-07,58 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:2394!3.27e-14!14;DOID:120!8.22e-09!27;DOID:0060072!1.89e-08!4;DOID:193!5.51e-08!29;DOID:0060084!2.87e-07!3;DOID:127!2.87e-07!3 | |ontology_enrichment_disease=DOID:2394!3.27e-14!14;DOID:120!8.22e-09!27;DOID:0060072!1.89e-08!4;DOID:193!5.51e-08!29;DOID:0060084!2.87e-07!3;DOID:127!2.87e-07!3 | ||
|ontology_enrichment_disease_v019=DOID:0060084;2.05e-13;3!DOID:127;2.05e-13;3!DOID:0060072;2.75e-10;4 | |ontology_enrichment_disease_v019=DOID:0060084;2.05e-13;3!DOID:127;2.05e-13;3!DOID:0060072;2.75e-10;4 | ||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.93e-13,3;DOID:127,1.93e-13,3;DOID:0060072,2.62e-10,4 | |||
|ontology_enrichment_uberon=UBERON:0000914!5.67e-16!83;UBERON:0002329!5.67e-16!83;UBERON:0003077!5.67e-16!83;UBERON:0003059!5.67e-16!83;UBERON:0007282!5.67e-16!83;UBERON:0009618!5.67e-16!83;UBERON:0007285!5.67e-16!83;UBERON:0004290!1.32e-15!70;UBERON:0000486!2.16e-14!82;UBERON:0001134!5.75e-14!61;UBERON:0002036!5.75e-14!61;UBERON:0003082!5.75e-14!61;UBERON:0002385!2.76e-13!63;UBERON:0001015!2.76e-13!63;UBERON:0000383!2.76e-13!63;UBERON:0003100!1.09e-10!41;UBERON:0003134!1.34e-09!37;UBERON:0000474!1.34e-09!37;UBERON:0001135!7.73e-09!15;UBERON:0005256!1.44e-08!143;UBERON:0002119!1.48e-08!4;UBERON:0004531!1.48e-08!4;UBERON:0005156!1.54e-08!59;UBERON:0000990!1.54e-08!59;UBERON:0000992!4.14e-08!13 | |ontology_enrichment_uberon=UBERON:0000914!5.67e-16!83;UBERON:0002329!5.67e-16!83;UBERON:0003077!5.67e-16!83;UBERON:0003059!5.67e-16!83;UBERON:0007282!5.67e-16!83;UBERON:0009618!5.67e-16!83;UBERON:0007285!5.67e-16!83;UBERON:0004290!1.32e-15!70;UBERON:0000486!2.16e-14!82;UBERON:0001134!5.75e-14!61;UBERON:0002036!5.75e-14!61;UBERON:0003082!5.75e-14!61;UBERON:0002385!2.76e-13!63;UBERON:0001015!2.76e-13!63;UBERON:0000383!2.76e-13!63;UBERON:0003100!1.09e-10!41;UBERON:0003134!1.34e-09!37;UBERON:0000474!1.34e-09!37;UBERON:0001135!7.73e-09!15;UBERON:0005256!1.44e-08!143;UBERON:0002119!1.48e-08!4;UBERON:0004531!1.48e-08!4;UBERON:0005156!1.54e-08!59;UBERON:0000990!1.54e-08!59;UBERON:0000992!4.14e-08!13 | ||
|ontology_enrichment_uberon_v019=UBERON:0001134;2.98e-09;16!UBERON:0002036;2.98e-09;16!UBERON:0002385;3.27e-07;31!UBERON:0001015;3.27e-07;31!UBERON:0000383;3.27e-07;31 | |ontology_enrichment_uberon_v019=UBERON:0001134;2.98e-09;16!UBERON:0002036;2.98e-09;16!UBERON:0002385;3.27e-07;31!UBERON:0001015;3.27e-07;31!UBERON:0000383;3.27e-07;31 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000995,2.73e-07,21;UBERON:0005795,5.78e-07,22;UBERON:0003975,5.78e-07,22 | |||
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| ||
|short_description=p@chr4:43341835..43341849,+ | |short_description=p@chr4:43341835..43341849,+ | ||
}} | }} |
Latest revision as of 05:20, 30 July 2015
Short description: | p@chr4:43341835..43341849, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:43341835..43341849, + |
Coexpression cluster: | C1401_Smooth_Fibroblast_leiomyoma_malignant_Small_Skeletal_Preadipocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 3.79e-16 | 9 |
uterine smooth muscle cell | 6.73e-11 | 1 |
multinucleate cell | 2.50e-10 | 1 |
myotube | 2.50e-10 | 1 |
muscle cell | 2.38e-07 | 55 |
muscle precursor cell | 6.24e-07 | 58 |
myoblast | 6.24e-07 | 58 |
multi-potent skeletal muscle stem cell | 6.24e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
uterus | 2.73e-07 | 21 |
embryonic uterus | 5.78e-07 | 22 |
internal female genitalia | 5.78e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.93e-13 | 3 |
leiomyoma | 1.93e-13 | 3 |
benign neoplasm | 2.62e-10 | 4 |