FFCP PHASE1:Hg19::chr21:11098922..11098942,-: Difference between revisions
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|id=chr21:11098922..11098942,-
|short_description=p1@BAGE3,p1@BAGE4,p1@BAGE5,p1@BAGE,p2@BAGE2
|description=CAGE_peak_1_at_BAGE3_5end,CAGE_peak_1_at_BAGE4_5end,CAGE_p...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=574,85317,85318,85319,85316 | |EntrezGene=574,85317,85318,85319,85316 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=15723,942,15730,15728,15732 | |HGNC=15723,942,15730,15728,15732 | ||
|TSSclassifier=strong | |||
|UniProt=Q13072,Q86Y28,Q86Y29,Q86Y27 | |UniProt=Q13072,Q86Y28,Q86Y29,Q86Y27 | ||
|association_with_transcript=0bp_to_ENST00000470054,NM_001187,NM_181704,NM_182481,NM_182482,NM_182484,uc002yit.1,uc002yiu.1,uc002yiv.1,uc002yix.2_5end | |||
|cluster_id=chr21:11098922..11098942,- | |||
|description=CAGE_peak_1_at_BAGE3_5end,CAGE_peak_1_at_BAGE4_5end,CAGE_peak_1_at_BAGE5_5end,CAGE_peak_1_at_BAGE_5end,CAGE_peak_2_at_BAGE2_5end | |||
|id=chr21:11098922..11098942,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002178;1.33e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,1.33e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.56e-26!235;DOID:14566!2.13e-25!239;DOID:0050687!8.19e-17!143;DOID:0050686!4.72e-13!137;DOID:305!1.77e-11!106;DOID:1036!2.84e-11!8;DOID:2531!7.89e-09!51;DOID:0060083!7.89e-09!51 | |||
|ontology_enrichment_disease_v019=DOID:1036;1.17e-16;8!DOID:1325;1.25e-07;7!DOID:3904;1.25e-07;7!DOID:2531;1.38e-07;51!DOID:0060083;1.38e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.19e-19,235;DOID:14566,4.20e-19,239;DOID:1036,1.30e-16,8;DOID:0050686,2.35e-15,137;DOID:2531,1.96e-10,51;DOID:0060083,1.96e-10,51;DOID:0050687,2.18e-09,143;DOID:1325,1.45e-07,7;DOID:3904,1.45e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.65e-12!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001282;5.91e-07;1!UBERON:0009842;5.91e-07;1!UBERON:0003704;5.91e-07;1!UBERON:0001171;5.91e-07;1!UBERON:0001172;5.91e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001282,5.75e-07,1;UBERON:0009842,5.75e-07,1;UBERON:0003704,5.75e-07,1;UBERON:0001171,5.75e-07,1;UBERON:0001172,5.75e-07,1;UBERON:0000945,7.02e-07,8;UBERON:0010039,7.02e-07,8 | |||
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| ||
|short_description=p1@BAGE3,p1@BAGE4,p1@BAGE5,p1@BAGE,p2@BAGE2 | |||
}} | }} |
Latest revision as of 17:56, 17 September 2015
Short description: | p1@BAGE3, p1@BAGE4, p1@BAGE5, p1@BAGE, p2@BAGE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BAGE3_5end, CAGE_peak_1_at_BAGE4_5end, CAGE_peak_1_at_BAGE5_5end, CAGE_peak_1_at_BAGE_5end, CAGE_peak_2_at_BAGE2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000470054, NM_001187, NM_181704, NM_182481, NM_182482, NM_182484, uc002yit.1, uc002yiu.1, uc002yiv.1, uc002yix.2_5end |
EntrezGene: | 574,85317,85318,85319,85316 |
HGNC: | 942, 15730, 15728, 15732&submit=Submit 15723, 942, 15730, 15728, 15732 |
UniProt: | Q13072Q86Y28Q86Y29Q86Y27 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 1.33e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
intralobular bile duct | 5.75e-07 | 1 |
acinus | 5.75e-07 | 1 |
intrahepatic bile duct | 5.75e-07 | 1 |
portal lobule | 5.75e-07 | 1 |
hepatic acinus | 5.75e-07 | 1 |
stomach | 7.02e-07 | 8 |
food storage organ | 7.02e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.19e-19 | 235 |
disease of cellular proliferation | 4.20e-19 | 239 |
chronic leukemia | 1.30e-16 | 8 |
organ system cancer | 2.35e-15 | 137 |
hematologic cancer | 1.96e-10 | 51 |
immune system cancer | 1.96e-10 | 51 |
cell type cancer | 2.18e-09 | 143 |
bronchus cancer | 1.45e-07 | 7 |
bronchogenic carcinoma | 1.45e-07 | 7 |