FFCP PHASE1:Hg19::chr7:103629614..103629646,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5649 | |EntrezGene=5649 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9957 | |HGNC=9957 | ||
|TSSclassifier=strong | |||
|UniProt=F8WF74 | |UniProt=F8WF74 | ||
|association_with_transcript=316bp_to_ENST00000424828_5end | |association_with_transcript=316bp_to_ENST00000424828_5end | ||
|cluster_id=chr7:103629614..103629646,- | |||
|coexpression_cluster_id=C2873 | |coexpression_cluster_id=C2873 | ||
|description=CAGE_peak_5_at_RELN_5end | |description=CAGE_peak_5_at_RELN_5end | ||
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|ontology_enrichment_celltype=CL:0000064!5.34e-07!3;CL:0005012!5.34e-07!3;CL:0000067!5.34e-07!3;CL:0002304!5.34e-07!3 | |ontology_enrichment_celltype=CL:0000064!5.34e-07!3;CL:0005012!5.34e-07!3;CL:0000067!5.34e-07!3;CL:0002304!5.34e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002138;8.12e-08;6!CL:0000123;9.69e-07;2!CL:0000242;9.69e-07;2 | |ontology_enrichment_celltype_v019=CL:0002138;8.12e-08;6!CL:0000123;9.69e-07;2!CL:0000242;9.69e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0005020,8.41e-08,6;CL:0002138,8.41e-08,6;CL:0005022,8.41e-08,6;CL:0000242,8.93e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;5.66e-33;3!UBERON:0005425;1.13e-11;1!CL:0005022;8.12e-08;6 | |ontology_enrichment_development_v019=UBERON:0006215;5.66e-33;3!UBERON:0005425;1.13e-11;1!CL:0005022;8.12e-08;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.09e-15!57;UBERON:0005068!1.09e-15!57;UBERON:0006241!1.09e-15!57;UBERON:0007135!1.09e-15!57;UBERON:0002346!1.38e-15!90;UBERON:0003075!1.58e-15!86;UBERON:0007284!1.58e-15!86;UBERON:0007023!1.17e-14!115;UBERON:0005743!5.10e-13!86;UBERON:0001017!6.68e-13!82;UBERON:0003056!1.59e-12!61;UBERON:0000073!3.74e-12!94;UBERON:0001016!3.74e-12!94;UBERON:0002616!4.36e-12!59;UBERON:0003080!6.73e-11!42;UBERON:0000955!2.40e-10!69;UBERON:0006238!2.40e-10!69;UBERON:0002780!8.29e-10!41;UBERON:0001890!8.29e-10!41;UBERON:0006240!8.29e-10!41;UBERON:0002791!9.88e-10!33;UBERON:0000153!1.13e-09!129;UBERON:0007811!1.13e-09!129;UBERON:0000924!2.06e-09!173;UBERON:0006601!2.06e-09!173;UBERON:0001893!2.38e-09!34;UBERON:0004121!3.36e-09!169;UBERON:0000033!6.64e-09!123;UBERON:0001869!8.02e-09!32;UBERON:0004111!2.50e-08!241;UBERON:0000477!3.82e-08!286;UBERON:0002020!3.94e-08!34;UBERON:0003528!3.94e-08!34;UBERON:0002465!3.87e-07!10;UBERON:0002619!4.63e-07!22;UBERON:0001778!5.34e-07!3;UBERON:0001775!5.34e-07!3;UBERON:0001032!7.77e-07!24;UBERON:0004456!7.77e-07!24 | |ontology_enrichment_uberon=UBERON:0001049!1.09e-15!57;UBERON:0005068!1.09e-15!57;UBERON:0006241!1.09e-15!57;UBERON:0007135!1.09e-15!57;UBERON:0002346!1.38e-15!90;UBERON:0003075!1.58e-15!86;UBERON:0007284!1.58e-15!86;UBERON:0007023!1.17e-14!115;UBERON:0005743!5.10e-13!86;UBERON:0001017!6.68e-13!82;UBERON:0003056!1.59e-12!61;UBERON:0000073!3.74e-12!94;UBERON:0001016!3.74e-12!94;UBERON:0002616!4.36e-12!59;UBERON:0003080!6.73e-11!42;UBERON:0000955!2.40e-10!69;UBERON:0006238!2.40e-10!69;UBERON:0002780!8.29e-10!41;UBERON:0001890!8.29e-10!41;UBERON:0006240!8.29e-10!41;UBERON:0002791!9.88e-10!33;UBERON:0000153!1.13e-09!129;UBERON:0007811!1.13e-09!129;UBERON:0000924!2.06e-09!173;UBERON:0006601!2.06e-09!173;UBERON:0001893!2.38e-09!34;UBERON:0004121!3.36e-09!169;UBERON:0000033!6.64e-09!123;UBERON:0001869!8.02e-09!32;UBERON:0004111!2.50e-08!241;UBERON:0000477!3.82e-08!286;UBERON:0002020!3.94e-08!34;UBERON:0003528!3.94e-08!34;UBERON:0002465!3.87e-07!10;UBERON:0002619!4.63e-07!22;UBERON:0001778!5.34e-07!3;UBERON:0001775!5.34e-07!3;UBERON:0001032!7.77e-07!24;UBERON:0004456!7.77e-07!24 | ||
|ontology_enrichment_uberon_v019=UBERON:0002037;7.92e-17;6!UBERON:0004732;2.09e-13;13!UBERON:0000941;1.13e-11;1!UBERON:0001785;1.13e-11;1!UBERON:0002464;1.13e-11;1!UBERON:0004904;1.13e-11;1!UBERON:0001021;1.13e-11;1!UBERON:0002680;2.07e-11;9!UBERON:0001895;2.07e-11;9!UBERON:0004733;1.10e-08;12!UBERON:0002028;1.10e-08;12!UBERON:0001871;5.50e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0002037;7.92e-17;6!UBERON:0004732;2.09e-13;13!UBERON:0000941;1.13e-11;1!UBERON:0001785;1.13e-11;1!UBERON:0002464;1.13e-11;1!UBERON:0004904;1.13e-11;1!UBERON:0001021;1.13e-11;1!UBERON:0002680;2.07e-11;9!UBERON:0001895;2.07e-11;9!UBERON:0004733;1.10e-08;12!UBERON:0002028;1.10e-08;12!UBERON:0001871;5.50e-07;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,8.14e-17,6;UBERON:0006215,8.14e-17,6;UBERON:0004732,2.09e-13,13;UBERON:0003076,9.34e-12,15;UBERON:0003057,9.34e-12,15;UBERON:0000941,1.07e-11,1;UBERON:0001785,1.07e-11,1;UBERON:0002464,1.07e-11,1;UBERON:0004904,1.07e-11,1;UBERON:0001021,1.07e-11,1;UBERON:0003902,1.07e-11,1;UBERON:0005425,1.07e-11,1;UBERON:0002680,2.11e-11,9;UBERON:0001895,2.11e-11,9;UBERON:0010092,2.11e-11,9;UBERON:0003075,3.39e-09,82;UBERON:0007284,3.39e-09,82;UBERON:0010371,9.53e-09,104;UBERON:0002346,1.02e-08,86;UBERON:0004733,1.11e-08,12;UBERON:0002028,1.11e-08,12;UBERON:0007277,1.11e-08,12;UBERON:0001049,1.63e-08,56;UBERON:0005068,1.63e-08,56;UBERON:0006241,1.63e-08,56;UBERON:0007135,1.63e-08,56;UBERON:0001016,3.72e-08,89;UBERON:0001017,2.92e-07,81;UBERON:0001871,5.51e-07,6 | |||
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|short_description=p5@RELN | |short_description=p5@RELN | ||
}} | }} |
Latest revision as of 20:02, 24 September 2015
Short description: | p5@RELN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RELN_5end |
Coexpression cluster: | C2873_cerebellum_pineal_mesothelioma_Endothelial_Lymphatic_merkel_chronic |
Association with transcript: | 316bp_to_ENST00000424828_5end |
EntrezGene: | RELN |
HGNC: | 9957 |
UniProt: | F8WF74 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 8.41e-08 | 6 |
endothelial cell of lymphatic vessel | 8.41e-08 | 6 |
vascular lymphangioblast | 8.41e-08 | 6 |
Merkel cell | 8.93e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 8.14e-17 | 6 |
rhombic lip | 8.14e-17 | 6 |
segmental subdivision of nervous system | 2.09e-13 | 13 |
posterior neural tube | 9.34e-12 | 15 |
chordal neural plate | 9.34e-12 | 15 |
cranial nerve II | 1.07e-11 | 1 |
cranial nerve | 1.07e-11 | 1 |
nerve trunk | 1.07e-11 | 1 |
nerve connecting eye with brain | 1.07e-11 | 1 |
nerve | 1.07e-11 | 1 |
retinal neural layer | 1.07e-11 | 1 |
presumptive neural retina | 1.07e-11 | 1 |
regional part of metencephalon | 2.11e-11 | 9 |
metencephalon | 2.11e-11 | 9 |
future metencephalon | 2.11e-11 | 9 |
neural plate | 3.39e-09 | 82 |
presumptive neural plate | 3.39e-09 | 82 |
ecto-epithelium | 9.53e-09 | 104 |
neurectoderm | 1.02e-08 | 86 |
segmental subdivision of hindbrain | 1.11e-08 | 12 |
hindbrain | 1.11e-08 | 12 |
presumptive hindbrain | 1.11e-08 | 12 |
neural tube | 1.63e-08 | 56 |
neural rod | 1.63e-08 | 56 |
future spinal cord | 1.63e-08 | 56 |
neural keel | 1.63e-08 | 56 |
nervous system | 3.72e-08 | 89 |
central nervous system | 2.92e-07 | 81 |
temporal lobe | 5.51e-07 | 6 |