FFCP PHASE1:Hg19::chr6:129204301..129204323,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3908 | |EntrezGene=3908 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6482 | |HGNC=6482 | ||
|TSSclassifier=strong | |||
|UniProt=F8WAH5,A6NGS5,P24043,Q59H37 | |UniProt=F8WAH5,A6NGS5,P24043,Q59H37 | ||
|association_with_transcript=15bp_to_ENST00000354729,ENST00000358023,NM_000426,NM_001079823,uc003qbn.2,uc003qbo.2_5end | |association_with_transcript=15bp_to_ENST00000354729,ENST00000358023,NM_000426,NM_001079823,uc003qbn.2,uc003qbo.2_5end | ||
|cluster_id=chr6:129204301..129204323,+ | |||
|coexpression_cluster_id=C4556 | |coexpression_cluster_id=C4556 | ||
|description=CAGE_peak_2_at_LAMA2_5end | |description=CAGE_peak_2_at_LAMA2_5end | ||
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|ontology_enrichment_celltype=CL:0000055!2.34e-17!180;CL:0000057!6.82e-13!75;CL:0000680!2.11e-10!57;CL:0000056!2.11e-10!57;CL:0000355!2.11e-10!57;CL:0000187!4.39e-09!54;CL:0000136!4.51e-09!15;CL:0000183!1.93e-08!59;CL:0000393!6.80e-08!60;CL:0000211!6.80e-08!60;CL:0002620!5.37e-07!23 | |ontology_enrichment_celltype=CL:0000055!2.34e-17!180;CL:0000057!6.82e-13!75;CL:0000680!2.11e-10!57;CL:0000056!2.11e-10!57;CL:0000355!2.11e-10!57;CL:0000187!4.39e-09!54;CL:0000136!4.51e-09!15;CL:0000183!1.93e-08!59;CL:0000393!6.80e-08!60;CL:0000211!6.80e-08!60;CL:0002620!5.37e-07!23 | ||
|ontology_enrichment_celltype_v019=CL:0000136;6.03e-09;13!CL:0002620;2.50e-07;23 | |ontology_enrichment_celltype_v019=CL:0000136;6.03e-09;13!CL:0002620;2.50e-07;23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.90e-13,76;CL:0000680,3.32e-10,58;CL:0000056,3.32e-10,58;CL:0000355,3.32e-10,58;CL:0000136,1.37e-09,15;CL:0000187,7.59e-09,55;CL:0000393,8.33e-08,61;CL:0000211,8.33e-08,61;CL:0002620,2.25e-07,23 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0007100;6.87e-13;25!UBERON:0000948;1.32e-10;22!UBERON:0002385;4.90e-09;31!UBERON:0001015;4.90e-09;31!UBERON:0000383;4.90e-09;31!UBERON:0001134;1.18e-08;16!UBERON:0002036;1.18e-08;16!UBERON:0007023;1.33e-08;114!UBERON:0001013;6.15e-07;14 | |ontology_enrichment_uberon_v019=UBERON:0007100;6.87e-13;25!UBERON:0000948;1.32e-10;22!UBERON:0002385;4.90e-09;31!UBERON:0001015;4.90e-09;31!UBERON:0000383;4.90e-09;31!UBERON:0001134;1.18e-08;16!UBERON:0002036;1.18e-08;16!UBERON:0007023;1.33e-08;114!UBERON:0001013;6.15e-07;14 | ||
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| ||
|short_description=p2@LAMA2 | |short_description=p2@LAMA2 | ||
}} | }} |
Latest revision as of 16:04, 24 September 2015
Short description: | p2@LAMA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LAMA2_5end |
Coexpression cluster: | C4556_Cardiac_heart_Adipocyte_Smooth_left_Fibroblast_skeletal |
Association with transcript: | 15bp_to_ENST00000354729, ENST00000358023, NM_000426, NM_001079823, uc003qbn.2, uc003qbo.2_5end |
EntrezGene: | LAMA2 |
HGNC: | 6482 |
UniProt: | F8WAH5A6NGS5P24043Q59H37 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.90e-13 | 76 |
muscle precursor cell | 3.32e-10 | 58 |
myoblast | 3.32e-10 | 58 |
multi-potent skeletal muscle stem cell | 3.32e-10 | 58 |
fat cell | 1.37e-09 | 15 |
muscle cell | 7.59e-09 | 55 |
electrically responsive cell | 8.33e-08 | 61 |
electrically active cell | 8.33e-08 | 61 |
skin fibroblast | 2.25e-07 | 23 |