FFCP PHASE1:Hg19::chr20:54987258..54987289,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:54987258..54987289,+
|short_description=p3@CASS4
|description=CAGE_peak_3_at_CASS4_5end
|association_with_transcript=-24bp_to_ENST00000371336,NM_001164114...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57091 | |EntrezGene=57091 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15878 | |HGNC=15878 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NQ75,B4DII4 | |UniProt=Q9NQ75,B4DII4 | ||
|association_with_transcript=-24bp_to_ENST00000371336,NM_001164114,NM_001164115,NM_020356,uc002xxq.3,uc002xxr.2,uc010gio.2,uc010zze.1_5end | |||
|cluster_id=chr20:54987258..54987289,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_3_at_CASS4_5end | |||
|id=chr20:54987258..54987289,+ | |||
|ontology_enrichment_celltype=CL:0000037!5.07e-40!172;CL:0000566!5.07e-40!172;CL:0000988!1.13e-35!182;CL:0002032!1.64e-35!165;CL:0000837!1.64e-35!165;CL:0000763!2.53e-35!112;CL:0000049!2.53e-35!112;CL:0000738!2.90e-35!140;CL:0000766!4.24e-29!76;CL:0002031!4.42e-25!124;CL:0000557!5.21e-25!71;CL:0000839!1.15e-23!70;CL:0002087!5.03e-22!119;CL:0002009!5.87e-22!65;CL:0002194!2.75e-20!63;CL:0000576!2.75e-20!63;CL:0000040!2.75e-20!63;CL:0000559!2.75e-20!63;CL:0002057!4.51e-18!42;CL:0000860!4.82e-16!45;CL:0000134!1.58e-13!358;CL:0002320!1.51e-12!365;CL:0000791!1.58e-12!18;CL:0000789!1.58e-12!18;CL:0002420!1.58e-12!18;CL:0002419!1.58e-12!18;CL:0000790!1.58e-12!18;CL:0000451!1.93e-09!10;CL:0000625!2.29e-09!11;CL:0000219!3.15e-09!390;CL:0000048!1.72e-08!430;CL:0000084!2.91e-08!25;CL:0000827!2.91e-08!25;CL:0000990!3.97e-08!8;CL:0000723!6.76e-08!436;CL:0000034!1.73e-07!444;CL:0000094!8.45e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.15e-20;18!CL:0000789;1.15e-20;18!CL:0002419;1.15e-20;18!CL:0000625;2.80e-18;11!CL:0000084;7.77e-14;25!CL:0000473;1.77e-12;39!CL:0000234;1.77e-12;39!CL:0000860;8.21e-12;33!CL:0002057;8.21e-12;33!CL:0000094;1.15e-10;8!CL:0000766;2.47e-10;69!CL:0000738;9.10e-09;136!CL:0000775;1.68e-08;3!CL:0000451;2.50e-08;10!CL:0000990;7.73e-08;8!CL:0000081;1.72e-07;11!CL:0000453;3.62e-07;5!CL:0000097;4.00e-07;5!CL:0000226;5.76e-07;3!CL:0000842;5.76e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.05e-37,136;CL:0000037,3.19e-32,168;CL:0000988,9.60e-30,177;CL:0002032,7.10e-29,161;CL:0000837,7.10e-29,161;CL:0002031,3.83e-24,120;CL:0000766,4.71e-24,72;CL:0000763,1.56e-22,108;CL:0000049,1.56e-22,108;CL:0002087,2.12e-21,115;CL:0000791,4.93e-21,18;CL:0000789,4.93e-21,18;CL:0002420,4.93e-21,18;CL:0002419,4.93e-21,18;CL:0000790,4.93e-21,18;CL:0000557,4.41e-19,67;CL:0000625,1.83e-18,11;CL:0000839,2.94e-16,66;CL:0002009,2.25e-15,61;CL:0000473,9.44e-15,48;CL:0000234,9.44e-15,48;CL:0000084,4.34e-14,25;CL:0000827,4.34e-14,25;CL:0002194,4.46e-13,59;CL:0000576,4.46e-13,59;CL:0000040,4.46e-13,59;CL:0000559,4.46e-13,59;CL:0000134,9.77e-12,354;CL:0000860,2.21e-11,42;CL:0002057,2.21e-11,42;CL:0002320,3.48e-11,361;CL:0000094,1.14e-10,8;CL:0000219,2.91e-09,386;CL:0000775,1.69e-08,3;CL:0000451,3.41e-08,10;CL:0000048,5.78e-08,427;CL:0000990,9.21e-08,8;CL:0000723,1.25e-07,433;CL:0000081,1.70e-07,11;CL:0000034,3.37e-07,441;CL:0000097,4.74e-07,5;CL:0002028,4.74e-07,5;CL:0000453,4.82e-07,5;CL:0000226,5.79e-07,3;CL:0000842,5.79e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;1.15e-20;18!CL:0002057;2.53e-08;42!CL:0000049;7.60e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.50e-30!102;UBERON:0003061!4.50e-30!102;UBERON:0002193!3.06e-27!112;UBERON:0002371!6.36e-21!80;UBERON:0001474!3.75e-18!86;UBERON:0002405!5.77e-16!115;UBERON:0004765!2.10e-13!101;UBERON:0001434!2.10e-13!101;UBERON:0002384!4.53e-12!375;UBERON:0000178!4.49e-08!15;UBERON:0000179!4.49e-08!15;UBERON:0000463!4.49e-08!15;UBERON:0007023!5.22e-08!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.83e-17;15!UBERON:0000179;3.83e-17;15!UBERON:0000463;3.83e-17;15!UBERON:0002390;5.17e-09;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,8.41e-30,98;UBERON:0003061,8.41e-30,98;UBERON:0002193,2.32e-27,108;UBERON:0000178,3.98e-17,15;UBERON:0000179,3.98e-17,15;UBERON:0000463,3.98e-17,15;UBERON:0002405,6.21e-16,93;UBERON:0002371,6.89e-16,76;UBERON:0001474,3.70e-14,82;UBERON:0004765,3.19e-12,90;UBERON:0002384,1.95e-10,371;UBERON:0001434,2.93e-10,100;UBERON:0003081,1.75e-08,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,1.39334510984468,0,0,0,0,0,0.293600439334847,1.66198622559563,0.802177789880567,0.217010870715852,0.447830948479849,0.647787332037959,0.515151135268373,4.65274364094607,4.53451132426571,1.94067248950253,2.78914844286822,1.6446715520873,1.54853185447552,0.575384784644301,0.512321413058201,0,1.03423704220986,0.645484683583826,0,1.88242339542605,1.09162460023138,2.69668181334102,1.22433556948361,2.24650318953266,3.19668562899521,0.329851300186716,0.598390972864896,0.426224750532694,0,0,0,0.502497330513487,0,1.3031330682307,0.605399502633369,0.736555271975129,0.632924774881769,0.211255286311942,1.27562579979026,0.209658645508376,2.2465726229299,1.80212271409808,0.964353520182481,0,0.39783335439818,0.182664153764634,0,1.09227722252426,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0.790152254325231,2.9506465517075,2.75107533924415,1.85041349099558,0.668745981562712,0.32592226663359,0.946895611469467,0,6.68462741311041,0.294605907474837,0.221533894583621,0.270803863765016,2.0494611156108,1.8208308658383,2.79544437826249,3.59255023121603,5.21645554323094,5.6348894001583,3.21048993707656,1.04535523804977,3.62589896632212,3.83220493601921,1.37450978193052,3.03623630423403,2.54852331459277,1.30216690771284,2.85135613334512,3.312652619711,3.07167866770604,4.99722906209383,2.8413270245282,0,1.61285394579786,2.94184215361858,3.04131248153878,0,0,0,0,0,0,0,0,0,0,0,0.458426764241994,0,0,1.9472843619281,1.0447784237956,0.531831842075461,0.953962497221368,1.14398982156026,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.2163210564583,15.511210565933,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.38168907066586,0.640672166455702,0.211931901159562,0.600182192168805,1.23663035086127,0,0,0.506328996723799,0,3.02920529092937,3.40584624976508,0.161646056818812,0.710019185033229,0.10075209822764,1.01736355386293,0,0,0,0,0,0,0,0,0,1.56449532329816,0,2.76269842704961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0.492434012174795,1.40402559083543,0.891786973732369,0,0,0,0,0,0,19.2138662779418,2.90559832243646,1.03664057770386,0.720599767084807,1.38866676769018,0,0,0,0,0,0,0,0.112131084345361,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,1.00451418286425,2.10833939483032,0,0,0,0,0,0,0,0.985153801009636,1.07813787429759,0.77005821767849,0,0,0,0,0,23.9682247663098,29.9161459204025,41.4415513436035,0,0,0,0,0.713715955188647,0,0,0.601892199455438,0,0,0,0.737476674166813,0.173767228936166,0,0,2.89475236572042,2.80428461064202,1.17400313583789,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0.355123450626254,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.309123034943167,0,0,0,0,0,0.290012154876366,0,0,0,0,0,0,0.623224249527161,0,0,0,0,0,0,0.6970372701606,0,0,0,0,0,0,0,0.38126038784765,5.11795582622668,0.855877976067841,0,0,0,0,0,0,0,0,1.46290121726877,0,0,0.136499911407986,0,0,0,0,0,0.578775534266688,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,8.62660935694688,10.7049208999933,10.8232965563091,5.00286728461357,9.04997000789627,15.5633594686252,7.56044012133361,7.13812658664843,0,0,0,0,0,0,0.159426272728822,0.199579371432817,1.53204296105893,2.11673582723883,0.973865820823666,1.40398589056729,0.912938716132769,0.47003968731907,0,2.53937666702405,0.1605880751037,0.403599414382095,0.425846237690326,0.687010689511529,0,0,0,0.19538809540204,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0.597743964753209,0,0,0,0,0.311039587661807,0,0,0.511572370226872,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.307801034015188,0,0,0,0,0.31900115973192,0,0,0,0.31396051279005,0,0,0.19606253431774,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0.943615861729479,0,0.468528891450678,0,0,0,0,0,0,0.758238955541855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316553979779393,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0.223171457441873,0.0671834724867263,0,0,0.0787831823072236,0,0.13480708770837,0,0,0,0,0,0,0,4.72445172258151,4.6428117273477,0.0607495566580247,0,0.236417121897595,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0.293104467356165,0,0,0,0,0,1.49502377594773,0.314408610199332,0.414239055347196,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.443716206147409,0.310482014706917,0,0,0,0,0,0,0,0,0.233713309847224,0.554805861502613,0,0,0,0,0.756154618816195,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59020231351293,0,0,0,0,0,0.138258436151731,1.16916185303633,1.19578356282027,0.490696182767533,0,0,0,0,0.426766918776564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414943514785307,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0.270150338473579,0,0,0.126831620387814,0,0.548257766857182,0,0,0,0,0,0.606965604236632,0,0.0887023701626388,0,0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| ||
|short_description=p3@CASS4 | |||
}} | }} |
Latest revision as of 03:07, 17 September 2015
Short description: | p3@CASS4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CASS4_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -24bp_to_ENST00000371336, NM_001164114, NM_001164115, NM_020356, uc002xxq.3, uc002xxr.2, uc010gio.2, uc010zze.1_5end |
EntrezGene: | CASS4 |
HGNC: | 15878 |
UniProt: | Q9NQ75B4DII4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 8.41e-30 | 98 |
blood island | 8.41e-30 | 98 |
hemolymphoid system | 2.32e-27 | 108 |
blood | 3.98e-17 | 15 |
haemolymphatic fluid | 3.98e-17 | 15 |
organism substance | 3.98e-17 | 15 |
immune system | 6.21e-16 | 93 |
bone marrow | 6.89e-16 | 76 |
bone element | 3.70e-14 | 82 |
skeletal element | 3.19e-12 | 90 |
connective tissue | 1.95e-10 | 371 |
skeletal system | 2.93e-10 | 100 |
lateral plate mesoderm | 1.75e-08 | 203 |