FFCP PHASE1:Hg19::chr20:50418128..50418147,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:50418128..50418147,-
|short_description=p2@SALL4
|description=CAGE_peak_2_at_SALL4_5end
|association_with_transcript=-3bp_to_ENST00000483130_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57167 | |EntrezGene=57167 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15924 | |HGNC=15924 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-3bp_to_ENST00000483130_5end | |||
|cluster_id=chr20:50418128..50418147,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_2_at_SALL4_5end | |||
|id=chr20:50418128..50418147,- | |||
|ontology_enrichment_celltype=CL:0000039!8.19e-10!7;CL:0000586!8.19e-10!7;CL:0000066!3.25e-09!254;CL:0002322!5.54e-08!5 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.27e-26;7!CL:0000586;1.27e-26;7!CL:0002322;3.69e-21;5!CL:0000148;7.45e-10;10!CL:0002321;2.52e-09;15!CL:0000147;6.17e-07;14!CL:0000540;9.12e-07;6!CL:0000404;9.12e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,9.75e-27,7;CL:0000586,9.75e-27,7;CL:0002322,3.78e-21,5;CL:0000148,7.89e-10,10;CL:0000541,7.89e-10,10;CL:0000147,6.42e-07,14;CL:0000540,9.04e-07,6;CL:0000031,9.04e-07,6;CL:0000404,9.04e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0009117;7.66e-10;10!UBERON:0005564;7.66e-10;10!CL:0000031;9.12e-07;6 | |||
|ontology_enrichment_disease=DOID:0050687!3.58e-19!143;DOID:305!9.30e-17!106;DOID:3095!3.16e-10!22;DOID:2994!3.16e-10!22;DOID:162!9.57e-08!235;DOID:14566!3.26e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:3095;9.63e-23;22!DOID:2994;9.63e-23;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,5.60e-23,22;DOID:2994,5.60e-23,22;DOID:0050687,5.62e-14,143;DOID:305,5.87e-12,106;DOID:162,2.64e-07,235;DOID:14566,5.10e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0005911!1.47e-07!82;UBERON:0001007!3.06e-07!155;UBERON:0001555!3.06e-07!155;UBERON:0007026!3.06e-07!155;UBERON:0003929!5.50e-07!54;UBERON:0004119!8.69e-07!169;UBERON:0000925!8.69e-07!169;UBERON:0006595!8.69e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.21e-08;8!UBERON:0000922;6.15e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.25e-08,8 | |||
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| ||
|short_description=p2@SALL4 | |||
}} | }} |
Latest revision as of 23:54, 16 September 2015
Short description: | p2@SALL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SALL4_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -3bp_to_ENST00000483130_5end |
EntrezGene: | SALL4 |
HGNC: | 15924 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 9.75e-27 | 7 |
germ cell | 9.75e-27 | 7 |
embryonic stem cell | 3.78e-21 | 5 |
melanocyte | 7.89e-10 | 10 |
melanoblast | 7.89e-10 | 10 |
pigment cell | 6.42e-07 | 14 |
neuron | 9.04e-07 | 6 |
neuroblast | 9.04e-07 | 6 |
electrically signaling cell | 9.04e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
testis | 3.25e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.60e-23 | 22 |
germ cell cancer | 5.60e-23 | 22 |
cell type cancer | 5.62e-14 | 143 |
carcinoma | 5.87e-12 | 106 |
cancer | 2.64e-07 | 235 |
disease of cellular proliferation | 5.10e-07 | 239 |