FFCP PHASE1:Hg19::chr20:48532019..48532044,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:48532019..48532044,-
|short_description=p1@SPATA2
|description=CAGE_peak_1_at_SPATA2_5end
|association_with_transcript=0bp_to_ENST00000289431_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9825 | |EntrezGene=9825 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14681 | |HGNC=14681 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UM82 | |UniProt=Q9UM82 | ||
|association_with_transcript=0bp_to_ENST00000289431_5end | |||
|cluster_id=chr20:48532019..48532044,- | |||
|description=CAGE_peak_1_at_SPATA2_5end | |||
|id=chr20:48532019..48532044,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.76e-21!57;UBERON:0005068!3.76e-21!57;UBERON:0006241!3.76e-21!57;UBERON:0007135!3.76e-21!57;UBERON:0001017!4.23e-17!82;UBERON:0005743!6.21e-17!86;UBERON:0002616!6.80e-17!59;UBERON:0002780!1.58e-15!41;UBERON:0001890!1.58e-15!41;UBERON:0006240!1.58e-15!41;UBERON:0003075!2.43e-15!86;UBERON:0007284!2.43e-15!86;UBERON:0000073!4.05e-15!94;UBERON:0001016!4.05e-15!94;UBERON:0000955!5.11e-15!69;UBERON:0006238!5.11e-15!69;UBERON:0003080!7.64e-15!42;UBERON:0001893!7.14e-14!34;UBERON:0002020!1.04e-13!34;UBERON:0003528!1.04e-13!34;UBERON:0002346!1.68e-13!90;UBERON:0002791!2.97e-13!33;UBERON:0001869!6.57e-13!32;UBERON:0002619!1.41e-11!22;UBERON:0003056!1.68e-11!61;UBERON:0001950!1.89e-10!20;UBERON:0007023!2.00e-09!115;UBERON:0000956!3.06e-09!25;UBERON:0000203!3.06e-09!25;UBERON:0003076!1.26e-07!15;UBERON:0003057!1.26e-07!15;UBERON:0000033!5.52e-07!123;UBERON:0004121!6.74e-07!169;UBERON:0004732!9.22e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;5.07e-12;34!UBERON:0001869;8.58e-12;32!UBERON:0003528;8.66e-12;34!UBERON:0002020;8.66e-12;34!UBERON:0000073;9.61e-12;53!UBERON:0002616;9.61e-12;53!UBERON:0002791;1.22e-11;32!UBERON:0002619;1.71e-11;22!UBERON:0002780;1.73e-11;41!UBERON:0001890;1.73e-11;41!UBERON:0001950;2.32e-10;20!UBERON:0000956;2.28e-09;25!UBERON:0000203;2.28e-09;25!UBERON:0000955;1.13e-07;68!UBERON:0001017;2.09e-07;75!UBERON:0004732;7.64e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,7.15e-22,56;UBERON:0005068,7.15e-22,56;UBERON:0006241,7.15e-22,56;UBERON:0007135,7.15e-22,56;UBERON:0000073,1.74e-20,53;UBERON:0002616,1.74e-20,53;UBERON:0001017,1.44e-17,81;UBERON:0003075,1.82e-16,82;UBERON:0007284,1.82e-16,82;UBERON:0001016,1.34e-15,89;UBERON:0002780,1.58e-15,41;UBERON:0001890,1.58e-15,41;UBERON:0003080,1.58e-15,41;UBERON:0006240,1.58e-15,41;UBERON:0000955,1.70e-15,68;UBERON:0006238,1.70e-15,68;UBERON:0002346,1.79e-14,86;UBERON:0010371,4.58e-14,104;UBERON:0001893,7.14e-14,34;UBERON:0003528,1.04e-13,34;UBERON:0002020,1.04e-13,34;UBERON:0001869,6.57e-13,32;UBERON:0002791,9.87e-13,32;UBERON:0003056,2.44e-12,61;UBERON:0002619,1.41e-11,22;UBERON:0001950,1.89e-10,20;UBERON:0000956,3.06e-09,25;UBERON:0000203,3.06e-09,25;UBERON:0007023,4.84e-09,114;UBERON:0010314,3.86e-08,132;UBERON:0003076,1.26e-07,15;UBERON:0003057,1.26e-07,15;UBERON:0004732,9.22e-07,13 | |||
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| ||
|short_description=p1@SPATA2 | |||
}} | }} |
Latest revision as of 20:18, 16 September 2015
Short description: | p1@SPATA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPATA2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000289431_5end |
EntrezGene: | SPATA2 |
HGNC: | 14681 |
UniProt: | Q9UM82 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 7.15e-22 | 56 |
neural rod | 7.15e-22 | 56 |
future spinal cord | 7.15e-22 | 56 |
neural keel | 7.15e-22 | 56 |
regional part of nervous system | 1.74e-20 | 53 |
regional part of brain | 1.74e-20 | 53 |
central nervous system | 1.44e-17 | 81 |
neural plate | 1.82e-16 | 82 |
presumptive neural plate | 1.82e-16 | 82 |
nervous system | 1.34e-15 | 89 |
regional part of forebrain | 1.58e-15 | 41 |
forebrain | 1.58e-15 | 41 |
anterior neural tube | 1.58e-15 | 41 |
future forebrain | 1.58e-15 | 41 |
brain | 1.70e-15 | 68 |
future brain | 1.70e-15 | 68 |
neurectoderm | 1.79e-14 | 86 |
ecto-epithelium | 4.58e-14 | 104 |
telencephalon | 7.14e-14 | 34 |
brain grey matter | 1.04e-13 | 34 |
gray matter | 1.04e-13 | 34 |
cerebral hemisphere | 6.57e-13 | 32 |
regional part of telencephalon | 9.87e-13 | 32 |
pre-chordal neural plate | 2.44e-12 | 61 |
regional part of cerebral cortex | 1.41e-11 | 22 |
neocortex | 1.89e-10 | 20 |
cerebral cortex | 3.06e-09 | 25 |
pallium | 3.06e-09 | 25 |
adult organism | 4.84e-09 | 114 |
structure with developmental contribution from neural crest | 3.86e-08 | 132 |
posterior neural tube | 1.26e-07 | 15 |
chordal neural plate | 1.26e-07 | 15 |
segmental subdivision of nervous system | 9.22e-07 | 13 |