FFCP PHASE1:Hg19::chr8:144911181..144911218,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22827 | |EntrezGene=22827 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17042 | |HGNC=17042 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UHX1,E9PN18 | |UniProt=Q9UHX1,E9PN18 | ||
|association_with_transcript=0bp_to_ENST00000313352,ENST00000453551,ENST00000529999,ENST00000531951,NM_001136033,uc003yzq.2,uc003yzr.2_5end | |association_with_transcript=0bp_to_ENST00000313352,ENST00000453551,ENST00000529999,ENST00000531951,NM_001136033,uc003yzq.2,uc003yzr.2_5end | ||
|cluster_id=chr8:144911181..144911218,- | |||
|description=CAGE_peak_3_at_PUF60_5end | |description=CAGE_peak_3_at_PUF60_5end | ||
|id=chr8:144911181..144911218,- | |id=chr8:144911181..144911218,- | ||
|ontology_enrichment_celltype=CL:0000055!6.67e-25!180;CL:0002321!4.15e-22!248;CL:0000220!1.04e-21!246;CL:0000183!1.24e-13!59;CL:0000680!1.90e-13!57;CL:0000056!1.90e-13!57;CL:0000355!1.90e-13!57;CL:0000187!8.66e-13!54;CL:0000393!2.47e-12!60;CL:0000211!2.47e-12!60;CL:0000192!2.18e-11!42;CL:0000514!2.18e-11!42;CL:0000222!2.02e-10!119;CL:0000359!9.00e-10!32;CL:0000057!5.10e-09!75;CL:0000221!8.40e-08!71;CL:0000066!6.87e-07!254 | |ontology_enrichment_celltype=CL:0000055!6.67e-25!180;CL:0002321!4.15e-22!248;CL:0000220!1.04e-21!246;CL:0000183!1.24e-13!59;CL:0000680!1.90e-13!57;CL:0000056!1.90e-13!57;CL:0000355!1.90e-13!57;CL:0000187!8.66e-13!54;CL:0000393!2.47e-12!60;CL:0000211!2.47e-12!60;CL:0000192!2.18e-11!42;CL:0000514!2.18e-11!42;CL:0000222!2.02e-10!119;CL:0000359!9.00e-10!32;CL:0000057!5.10e-09!75;CL:0000221!8.40e-08!71;CL:0000066!6.87e-07!254 | ||
|ontology_enrichment_celltype_v019=CL:0000359;4.35e-09;32!CL:0000192;8.85e-08;43!CL:0000187;7.44e-07;55 | |ontology_enrichment_celltype_v019=CL:0000359;4.35e-09;32!CL:0000192;8.85e-08;43!CL:0000187;7.44e-07;55 | ||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.80e-18,250;CL:0000680,3.66e-14,58;CL:0000056,3.66e-14,58;CL:0000355,3.66e-14,58;CL:0000187,2.24e-13,55;CL:0000393,1.37e-12,61;CL:0000211,1.37e-12,61;CL:0000192,2.83e-11,43;CL:0000514,2.83e-11,43;CL:0000359,2.94e-10,32;CL:0000222,5.38e-09,121;CL:0000057,7.95e-08,76;CL:0000221,2.05e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000514;8.85e-08;43!CL:0000355;5.81e-07;58 | |ontology_enrichment_development_v019=CL:0000514;8.85e-08;43!CL:0000355;5.81e-07;58 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.06e-19!365;UBERON:0000119!5.57e-17!312;UBERON:0000483!1.41e-16!309;UBERON:0000914!2.56e-15!83;UBERON:0002329!2.56e-15!83;UBERON:0003077!2.56e-15!83;UBERON:0003059!2.56e-15!83;UBERON:0007282!2.56e-15!83;UBERON:0009618!2.56e-15!83;UBERON:0007285!2.56e-15!83;UBERON:0000481!2.96e-15!347;UBERON:0000486!3.27e-14!82;UBERON:0004290!1.33e-13!70;UBERON:0005256!5.58e-12!143;UBERON:0001134!1.12e-10!61;UBERON:0002036!1.12e-10!61;UBERON:0003082!1.12e-10!61;UBERON:0000477!1.20e-10!286;UBERON:0004111!5.31e-10!241;UBERON:0002100!7.09e-10!216;UBERON:0002385!1.05e-09!63;UBERON:0001015!1.05e-09!63;UBERON:0000383!1.05e-09!63;UBERON:0000025!2.31e-09!194;UBERON:0003104!3.23e-09!238;UBERON:0009142!3.23e-09!238;UBERON:0004121!1.08e-07!169;UBERON:0000490!1.10e-07!138;UBERON:0000033!2.15e-07!123;UBERON:0000924!3.47e-07!173;UBERON:0006601!3.47e-07!173;UBERON:0002049!3.65e-07!79;UBERON:0007798!3.65e-07!79;UBERON:0001637!4.62e-07!42;UBERON:0003509!4.62e-07!42;UBERON:0004572!4.62e-07!42;UBERON:0003102!8.48e-07!95 | |ontology_enrichment_uberon=UBERON:0000475!2.06e-19!365;UBERON:0000119!5.57e-17!312;UBERON:0000483!1.41e-16!309;UBERON:0000914!2.56e-15!83;UBERON:0002329!2.56e-15!83;UBERON:0003077!2.56e-15!83;UBERON:0003059!2.56e-15!83;UBERON:0007282!2.56e-15!83;UBERON:0009618!2.56e-15!83;UBERON:0007285!2.56e-15!83;UBERON:0000481!2.96e-15!347;UBERON:0000486!3.27e-14!82;UBERON:0004290!1.33e-13!70;UBERON:0005256!5.58e-12!143;UBERON:0001134!1.12e-10!61;UBERON:0002036!1.12e-10!61;UBERON:0003082!1.12e-10!61;UBERON:0000477!1.20e-10!286;UBERON:0004111!5.31e-10!241;UBERON:0002100!7.09e-10!216;UBERON:0002385!1.05e-09!63;UBERON:0001015!1.05e-09!63;UBERON:0000383!1.05e-09!63;UBERON:0000025!2.31e-09!194;UBERON:0003104!3.23e-09!238;UBERON:0009142!3.23e-09!238;UBERON:0004121!1.08e-07!169;UBERON:0000490!1.10e-07!138;UBERON:0000033!2.15e-07!123;UBERON:0000924!3.47e-07!173;UBERON:0006601!3.47e-07!173;UBERON:0002049!3.65e-07!79;UBERON:0007798!3.65e-07!79;UBERON:0001637!4.62e-07!42;UBERON:0003509!4.62e-07!42;UBERON:0004572!4.62e-07!42;UBERON:0003102!8.48e-07!95 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
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| ||
|short_description=p3@PUF60 | |short_description=p3@PUF60 | ||
}} | }} |
Latest revision as of 23:20, 16 September 2015
Short description: | p3@PUF60 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PUF60_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000313352, ENST00000453551, ENST00000529999, ENST00000531951, NM_001136033, uc003yzq.2, uc003yzr.2_5end |
EntrezGene: | PUF60 |
HGNC: | 17042 |
UniProt: | Q9UHX1E9PN18 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.80e-18 | 250 |
muscle precursor cell | 3.66e-14 | 58 |
myoblast | 3.66e-14 | 58 |
multi-potent skeletal muscle stem cell | 3.66e-14 | 58 |
muscle cell | 2.24e-13 | 55 |
electrically responsive cell | 1.37e-12 | 61 |
electrically active cell | 1.37e-12 | 61 |
smooth muscle cell | 2.83e-11 | 43 |
smooth muscle myoblast | 2.83e-11 | 43 |
vascular associated smooth muscle cell | 2.94e-10 | 32 |
mesodermal cell | 5.38e-09 | 121 |
fibroblast | 7.95e-08 | 76 |
ectodermal cell | 2.05e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
paraxial mesoderm | 2.07e-15 | 72 |
presumptive paraxial mesoderm | 2.07e-15 | 72 |
dense mesenchyme tissue | 2.27e-15 | 73 |
cell layer | 2.66e-15 | 309 |
somite | 4.44e-15 | 71 |
presomitic mesoderm | 4.44e-15 | 71 |
presumptive segmental plate | 4.44e-15 | 71 |
dermomyotome | 4.44e-15 | 71 |
trunk paraxial mesoderm | 4.44e-15 | 71 |
epithelium | 5.70e-15 | 306 |
epithelial vesicle | 8.03e-15 | 78 |
multilaminar epithelium | 2.72e-14 | 83 |
skeletal muscle tissue | 4.72e-12 | 62 |
striated muscle tissue | 4.72e-12 | 62 |
myotome | 4.72e-12 | 62 |
muscle tissue | 4.04e-11 | 64 |
musculature | 4.04e-11 | 64 |
musculature of body | 4.04e-11 | 64 |
unilaminar epithelium | 3.72e-10 | 148 |
trunk mesenchyme | 1.47e-09 | 122 |
mesenchyme | 2.56e-09 | 160 |
entire embryonic mesenchyme | 2.56e-09 | 160 |
tube | 1.00e-08 | 192 |
anatomical conduit | 2.45e-08 | 240 |
structure with developmental contribution from neural crest | 2.78e-08 | 132 |
artery | 4.99e-08 | 42 |
arterial blood vessel | 4.99e-08 | 42 |
arterial system | 4.99e-08 | 42 |
splanchnic layer of lateral plate mesoderm | 3.09e-07 | 83 |
ectoderm-derived structure | 8.73e-07 | 171 |
ectoderm | 8.73e-07 | 171 |
presumptive ectoderm | 8.73e-07 | 171 |