FFCP PHASE1:Hg19::chr1:203452665..203452676,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5549 | |EntrezGene=5549 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=9357 | |HGNC=9357 | ||
|TSSclassifier=strong | |||
|UniProt=Q6FHG6,Q6FG38 | |UniProt=Q6FHG6,Q6FG38 | ||
|association_with_transcript=352bp_to_CR541787,CR542270_5end | |association_with_transcript=352bp_to_CR541787,CR542270_5end | ||
|cluster_id=chr1:203452665..203452676,+ | |||
|coexpression_cluster_id=C930 | |coexpression_cluster_id=C930 | ||
|description=CAGE_peak_9_at_PRELP_5end | |description=CAGE_peak_9_at_PRELP_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000136!1.34e-08!15;CL:0000153!2.62e-07!9;CL:0000447!2.62e-07!9;CL:0002615!8.06e-07!3 | |ontology_enrichment_celltype=CL:0000136!1.34e-08!15;CL:0000153!2.62e-07!9;CL:0000447!2.62e-07!9;CL:0002615!8.06e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000153;3.40e-22;9!CL:0000447;3.40e-22;9!CL:0000136;2.58e-21;13!CL:0002615;1.45e-18;3!CL:0000138;2.50e-15;6!CL:0000327;4.22e-13;15!CL:0002617;9.38e-13;2!CL:0000499;9.90e-12;28!CL:0000214;1.46e-08;3!CL:0000135;1.93e-08;3!CL:0000388;1.93e-08;3!CL:0002616;2.90e-07;1 | |ontology_enrichment_celltype_v019=CL:0000153;3.40e-22;9!CL:0000447;3.40e-22;9!CL:0000136;2.58e-21;13!CL:0002615;1.45e-18;3!CL:0000138;2.50e-15;6!CL:0000327;4.22e-13;15!CL:0002617;9.38e-13;2!CL:0000499;9.90e-12;28!CL:0000214;1.46e-08;3!CL:0000135;1.93e-08;3!CL:0000388;1.93e-08;3!CL:0002616;2.90e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000153,1.99e-22,9;CL:0000447,1.99e-22,9;CL:0002615,1.45e-18,3;CL:0000136,2.23e-18,15;CL:0000058,1.49e-15,6;CL:0000138,1.49e-15,6;CL:0000327,3.09e-13,15;CL:0002617,9.39e-13,2;CL:0000499,7.39e-12,28;CL:0000214,1.43e-08,3;CL:0000135,1.60e-08,3;CL:0000388,1.60e-08,3;CL:0002616,2.99e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0006965;1.67e-12;2!UBERON:0004874;5.68e-07;1 | |ontology_enrichment_development_v019=UBERON:0006965;1.67e-12;2!UBERON:0004874;5.68e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.95e-44!115;UBERON:0004457!1.55e-12!12;UBERON:0000042!1.55e-12!12;UBERON:0003688!1.84e-10!6;UBERON:0002358!1.84e-10!6;UBERON:0003684!1.84e-10!6;UBERON:0001178!1.84e-10!6;UBERON:0001049!2.81e-09!57;UBERON:0005068!2.81e-09!57;UBERON:0006241!2.81e-09!57;UBERON:0007135!2.81e-09!57;UBERON:0003075!5.67e-09!86;UBERON:0007284!5.67e-09!86;UBERON:0002346!3.12e-08!90;UBERON:0003080!8.34e-08!42;UBERON:0002616!8.57e-08!59;UBERON:0002780!5.55e-07!41;UBERON:0001890!5.55e-07!41;UBERON:0006240!5.55e-07!41 | |ontology_enrichment_uberon=UBERON:0007023!5.95e-44!115;UBERON:0004457!1.55e-12!12;UBERON:0000042!1.55e-12!12;UBERON:0003688!1.84e-10!6;UBERON:0002358!1.84e-10!6;UBERON:0003684!1.84e-10!6;UBERON:0001178!1.84e-10!6;UBERON:0001049!2.81e-09!57;UBERON:0005068!2.81e-09!57;UBERON:0006241!2.81e-09!57;UBERON:0007135!2.81e-09!57;UBERON:0003075!5.67e-09!86;UBERON:0007284!5.67e-09!86;UBERON:0002346!3.12e-08!90;UBERON:0003080!8.34e-08!42;UBERON:0002616!8.57e-08!59;UBERON:0002780!5.55e-07!41;UBERON:0001890!5.55e-07!41;UBERON:0006240!5.55e-07!41 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;3.89e-16;9!UBERON:0000042;3.89e-16;9!UBERON:0003688;1.60e-09;6!UBERON:0002358;1.60e-09;6!UBERON:0003684;1.60e-09;6!UBERON:0001178;1.60e-09;6!UBERON:0006915;1.46e-08;3!UBERON:0007616;1.46e-08;3!UBERON:0002217;1.46e-08;3!UBERON:0002018;1.46e-08;3!UBERON:0007846;1.93e-08;3!UBERON:0000043;1.93e-08;3!UBERON:0007845;1.93e-08;3!UBERON:0002135;2.36e-07;1!UBERON:0000996;4.13e-07;1!UBERON:0000989;5.68e-07;1!UBERON:0008811;5.68e-07;1 | |ontology_enrichment_uberon_v019=UBERON:0004457;3.89e-16;9!UBERON:0000042;3.89e-16;9!UBERON:0003688;1.60e-09;6!UBERON:0002358;1.60e-09;6!UBERON:0003684;1.60e-09;6!UBERON:0001178;1.60e-09;6!UBERON:0006915;1.46e-08;3!UBERON:0007616;1.46e-08;3!UBERON:0002217;1.46e-08;3!UBERON:0002018;1.46e-08;3!UBERON:0007846;1.93e-08;3!UBERON:0000043;1.93e-08;3!UBERON:0007845;1.93e-08;3!UBERON:0002135;2.36e-07;1!UBERON:0000996;4.13e-07;1!UBERON:0000989;5.68e-07;1!UBERON:0008811;5.68e-07;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004457,4.79e-12,12;UBERON:0000042,4.79e-12,12;UBERON:0003688,1.60e-09,6;UBERON:0002358,1.60e-09,6;UBERON:0003684,1.60e-09,6;UBERON:0001178,1.60e-09,6;UBERON:0006915,1.43e-08,3;UBERON:0007616,1.43e-08,3;UBERON:0002217,1.43e-08,3;UBERON:0002018,1.43e-08,3;UBERON:0007846,1.60e-08,3;UBERON:0000043,1.60e-08,3;UBERON:0007845,1.60e-08,3;UBERON:0007023,8.15e-08,114;UBERON:0002135,2.36e-07,1;UBERON:0000996,3.78e-07,1;UBERON:0000989,5.06e-07,1;UBERON:0008811,5.06e-07,1;UBERON:0006258,5.06e-07,1;UBERON:0005876,5.06e-07,1;UBERON:0004874,5.06e-07,1 | |||
|phase1_expression=3.27021082687002,6.85121676451146,5.63817616383885,6.00439790118782,8.49226079411847,5.23403114460221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,0,1.88300474649071,4.7717156823066,12.1658717575659,0,0,0.175669571386252,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0.150238058906597,0,0.538168907066586,1.06778694409284,0,0,0,0.257640540045629,0.18611685633159,0,0,0,0.0920498986422993,1.13152239773168,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.719792448923265,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0.496215615637554,0,0,0.896974044789907,0.511707249066704,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,3.58882980006029,2.30506425071931,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0.994147647766298,0.422008249231538,0,0,0,4.5827037297746,0.828851746593443,0,0,0,1.24415835064723,0,0,0,1.479651084554,0,0,0,0.185536196323703,0,0,0,2.17499872630438,0,0,0,0,0,0,0,0.361789315876224,0,0.221158519862449,0.295547618953547,0.219385397153973,0,0,1.00035336054936,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,0.611030144933625,0,0,0,0.134802265961354,0,0,0,0,0,0.394584402849391,1.20990716048664,0,0.63186579628488,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.581934098930517,0,2.25980740780532,0,0,0.0633107959558787,0,0,1.49417096317547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.81990723562312,0.458320848023367,0.717873024576814,0,3.004582336956,0.446342914883745,0.134366944973453,0.360299883542404,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.121499113316049,0,0.0788057072991982,0,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0.653174720218818,0,0,0,0,0.146552233678082,0,0.129282956361551,0,0,0,1.28144895081234,0.157204305099666,0.414239055347196,0,0,0,0,0,0.2506898940227,0.612691153526923,2.62298104567844,0,0,0.610131324509816,0.250381861413,0,0.332787154610557,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0.302461847526478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0.617602894321944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0.397832444232549,0.82731361184183,0,0.781514011233092,0,0.327543835020193,0,0,0,0.206686796501184,0,0,0,2.48105589194647,0,0,0.535701835878287,0.672567444437648,1.21393120847326,0,0,0,0.171488009437418,0,0,0,0,0.313972371402056,0.157115589916002,0,0,0,0,0.643288897589907,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,2.20633489578515,0,0.981542335574726,0,0,0,0.187967835959707,0.128915775947154,0,0,0,0,0,0.458729283404541,0.430018749454354,0,0,0,1.0580536810308,0,4.62175628631418,1.73050624849516,0,0,0,0,0,0,0,0.606229585745915,0,0,0.20686599172379,1.27940389140589,0.476128862927481,0,0,0,0.381882949668989,0,1.52401723527873,0,0,0.502055437748735,0.332660356546013,0,0,0,0,0,0.733448665097199,0,3.99454064511308,2.41528552309231,0 | |phase1_expression=3.27021082687002,6.85121676451146,5.63817616383885,6.00439790118782,8.49226079411847,5.23403114460221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,0,1.88300474649071,4.7717156823066,12.1658717575659,0,0,0.175669571386252,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0.150238058906597,0,0.538168907066586,1.06778694409284,0,0,0,0.257640540045629,0.18611685633159,0,0,0,0.0920498986422993,1.13152239773168,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.719792448923265,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0.496215615637554,0,0,0.896974044789907,0.511707249066704,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,3.58882980006029,2.30506425071931,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0.994147647766298,0.422008249231538,0,0,0,4.5827037297746,0.828851746593443,0,0,0,1.24415835064723,0,0,0,1.479651084554,0,0,0,0.185536196323703,0,0,0,2.17499872630438,0,0,0,0,0,0,0,0.361789315876224,0,0.221158519862449,0.295547618953547,0.219385397153973,0,0,1.00035336054936,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,0.611030144933625,0,0,0,0.134802265961354,0,0,0,0,0,0.394584402849391,1.20990716048664,0,0.63186579628488,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.581934098930517,0,2.25980740780532,0,0,0.0633107959558787,0,0,1.49417096317547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.81990723562312,0.458320848023367,0.717873024576814,0,3.004582336956,0.446342914883745,0.134366944973453,0.360299883542404,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.121499113316049,0,0.0788057072991982,0,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0.653174720218818,0,0,0,0,0.146552233678082,0,0.129282956361551,0,0,0,1.28144895081234,0.157204305099666,0.414239055347196,0,0,0,0,0,0.2506898940227,0.612691153526923,2.62298104567844,0,0,0.610131324509816,0.250381861413,0,0.332787154610557,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0.302461847526478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0.617602894321944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0.397832444232549,0.82731361184183,0,0.781514011233092,0,0.327543835020193,0,0,0,0.206686796501184,0,0,0,2.48105589194647,0,0,0.535701835878287,0.672567444437648,1.21393120847326,0,0,0,0.171488009437418,0,0,0,0,0.313972371402056,0.157115589916002,0,0,0,0,0.643288897589907,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,2.20633489578515,0,0.981542335574726,0,0,0,0.187967835959707,0.128915775947154,0,0,0,0,0,0.458729283404541,0.430018749454354,0,0,0,1.0580536810308,0,4.62175628631418,1.73050624849516,0,0,0,0,0,0,0,0.606229585745915,0,0,0.20686599172379,1.27940389140589,0.476128862927481,0,0,0,0.381882949668989,0,1.52401723527873,0,0,0.502055437748735,0.332660356546013,0,0,0,0,0,0.733448665097199,0,3.99454064511308,2.41528552309231,0 | ||
|short_description=p9@PRELP | |short_description=p9@PRELP | ||
}} | }} |
Latest revision as of 23:20, 19 September 2015
Short description: | p9@PRELP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_PRELP_5end |
Coexpression cluster: | C930_Chondrocyte_vagina_heart_Adipocyte_aorta_bladder_mature |
Association with transcript: | 352bp_to_CR541787, CR542270_5end |
EntrezGene: | PRELP |
HGNC: | 9357 |
UniProt: | Q6FHG6Q6FG38 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 1.99e-22 | 9 |
carbohydrate secreting cell | 1.99e-22 | 9 |
adipocyte of omentum tissue | 1.45e-18 | 3 |
fat cell | 2.23e-18 | 15 |
chondroblast | 1.49e-15 | 6 |
chondrocyte | 1.49e-15 | 6 |
extracellular matrix secreting cell | 3.09e-13 | 15 |
adipocyte of breast | 9.39e-13 | 2 |
stromal cell | 7.39e-12 | 28 |
synovial cell | 1.43e-08 | 3 |
fibrocyte | 1.60e-08 | 3 |
tendon cell | 1.60e-08 | 3 |
perirenal adipocyte cell | 2.99e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
cavity lining | 4.79e-12 | 12 |
serous membrane | 4.79e-12 | 12 |
omentum | 1.60e-09 | 6 |
peritoneum | 1.60e-09 | 6 |
abdominal cavity | 1.60e-09 | 6 |
visceral peritoneum | 1.60e-09 | 6 |
stratified squamous epithelium | 1.43e-08 | 3 |
layer of synovial tissue | 1.43e-08 | 3 |
synovial joint | 1.43e-08 | 3 |
synovial membrane of synovial joint | 1.43e-08 | 3 |
dense regular connective tissue | 1.60e-08 | 3 |
tendon | 1.60e-08 | 3 |
regular connective tissue | 1.60e-08 | 3 |
adult organism | 8.15e-08 | 114 |
mitral valve | 2.36e-07 | 1 |
vagina | 3.78e-07 | 1 |
penis | 5.06e-07 | 1 |
intromittent organ | 5.06e-07 | 1 |
lateral plate mesenchyme | 5.06e-07 | 1 |
undifferentiated genital tubercle | 5.06e-07 | 1 |
somatopleure | 5.06e-07 | 1 |