FFCP PHASE1:Hg19::chr20:35580040..35580066,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:35580040..35580066,-
|short_description=p3@SAMHD1
|description=CAGE_peak_3_at_SAMHD1_5end
|association_with_transcript=44bp_to_ENST00000373694_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25939 | |EntrezGene=25939 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15925 | |HGNC=15925 | ||
|TSSclassifier=strong | |||
|UniProt=A6NDZ3 | |UniProt=A6NDZ3 | ||
|association_with_transcript=44bp_to_ENST00000373694_5end | |||
|cluster_id=chr20:35580040..35580066,- | |||
|coexpression_cluster_id=C936 | |||
|description=CAGE_peak_3_at_SAMHD1_5end | |||
|id=chr20:35580040..35580066,- | |||
|ontology_enrichment_celltype=CL:0002087!1.37e-24!119;CL:0000738!1.65e-23!140;CL:0002031!9.61e-20!124;CL:0002194!2.10e-19!63;CL:0000576!2.10e-19!63;CL:0000040!2.10e-19!63;CL:0000559!2.10e-19!63;CL:0002009!3.11e-19!65;CL:0000766!1.68e-18!76;CL:0000557!4.42e-17!71;CL:0002057!2.51e-16!42;CL:0000860!5.79e-16!45;CL:0000839!6.45e-15!70;CL:0000037!3.19e-13!172;CL:0000566!3.19e-13!172;CL:0002032!7.49e-12!165;CL:0000837!7.49e-12!165;CL:0000988!3.53e-11!182;CL:0000791!3.61e-11!18;CL:0000789!3.61e-11!18;CL:0002420!3.61e-11!18;CL:0002419!3.61e-11!18;CL:0000790!3.61e-11!18;CL:0000625!4.32e-07!11;CL:0000763!6.56e-07!112;CL:0000049!6.56e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;5.88e-12;39!CL:0000234;5.88e-12;39!CL:0000860;1.15e-11;33!CL:0002057;1.15e-11;33!CL:0000576;1.19e-11;48!CL:0000791;2.04e-11;18!CL:0000789;2.04e-11;18!CL:0002419;2.04e-11;18!CL:0000766;1.51e-08;69!CL:0002087;8.91e-08;104!CL:0000625;3.09e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,1.34e-26,115;CL:0000738,1.72e-25,136;CL:0002031,7.45e-22,120;CL:0002194,3.57e-21,59;CL:0000576,3.57e-21,59;CL:0000040,3.57e-21,59;CL:0000559,3.57e-21,59;CL:0002009,6.05e-21,61;CL:0000766,3.44e-20,72;CL:0000473,4.96e-19,48;CL:0000234,4.96e-19,48;CL:0000557,9.88e-19,67;CL:0000839,1.05e-16,66;CL:0000860,1.34e-16,42;CL:0002057,1.34e-16,42;CL:0000037,2.58e-15,168;CL:0002032,9.71e-14,161;CL:0000837,9.71e-14,161;CL:0000988,8.49e-13,177;CL:0000791,2.40e-11,18;CL:0000789,2.40e-11,18;CL:0002420,2.40e-11,18;CL:0002419,2.40e-11,18;CL:0000790,2.40e-11,18;CL:0000763,3.70e-08,108;CL:0000049,3.70e-08,108;CL:0000625,3.42e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;3.88e-12;42!CL:0000790;2.04e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!5.81e-21!112;UBERON:0002390!4.44e-20!102;UBERON:0003061!4.44e-20!102;UBERON:0007023!1.37e-14!115;UBERON:0002405!1.45e-14!115;UBERON:0002371!4.65e-14!80;UBERON:0001474!1.27e-11!86;UBERON:0004765!1.01e-09!101;UBERON:0001434!1.01e-09!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.68e-22,108;UBERON:0002390,1.18e-21,98;UBERON:0003061,1.18e-21,98;UBERON:0002405,3.21e-18,93;UBERON:0002371,2.05e-15,76;UBERON:0007023,1.11e-14,114;UBERON:0001474,1.14e-12,82;UBERON:0004765,1.04e-11,90;UBERON:0001434,4.51e-10,100 | |||
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| ||
|short_description=p3@SAMHD1 | |||
}} | }} |
Latest revision as of 00:27, 16 September 2015
Short description: | p3@SAMHD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SAMHD1_5end |
Coexpression cluster: | C936_CD4_CD14_granulocyte_CD14CD16_CD8_Dendritic_Hair |
Association with transcript: | 44bp_to_ENST00000373694_5end |
EntrezGene: | SAMHD1 |
HGNC: | 15925 |
UniProt: | A6NDZ3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nongranular leukocyte | 1.34e-26 | 115 |
leukocyte | 1.72e-25 | 136 |
hematopoietic lineage restricted progenitor cell | 7.45e-22 | 120 |
monopoietic cell | 3.57e-21 | 59 |
monocyte | 3.57e-21 | 59 |
monoblast | 3.57e-21 | 59 |
promonocyte | 3.57e-21 | 59 |
macrophage dendritic cell progenitor | 6.05e-21 | 61 |
myeloid leukocyte | 3.44e-20 | 72 |
defensive cell | 4.96e-19 | 48 |
phagocyte | 4.96e-19 | 48 |
granulocyte monocyte progenitor cell | 9.88e-19 | 67 |
myeloid lineage restricted progenitor cell | 1.05e-16 | 66 |
classical monocyte | 1.34e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.34e-16 | 42 |
hematopoietic stem cell | 2.58e-15 | 168 |
hematopoietic oligopotent progenitor cell | 9.71e-14 | 161 |
hematopoietic multipotent progenitor cell | 9.71e-14 | 161 |
hematopoietic cell | 8.49e-13 | 177 |
mature alpha-beta T cell | 2.40e-11 | 18 |
alpha-beta T cell | 2.40e-11 | 18 |
immature T cell | 2.40e-11 | 18 |
mature T cell | 2.40e-11 | 18 |
immature alpha-beta T cell | 2.40e-11 | 18 |
myeloid cell | 3.70e-08 | 108 |
common myeloid progenitor | 3.70e-08 | 108 |
CD8-positive, alpha-beta T cell | 3.42e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.68e-22 | 108 |
hematopoietic system | 1.18e-21 | 98 |
blood island | 1.18e-21 | 98 |
immune system | 3.21e-18 | 93 |
bone marrow | 2.05e-15 | 76 |
adult organism | 1.11e-14 | 114 |
bone element | 1.14e-12 | 82 |
skeletal element | 1.04e-11 | 90 |
skeletal system | 4.51e-10 | 100 |