FFCP PHASE1:Hg19::chr15:55806847..55806854,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr15:55806847..55806854,- | |||
|coexpression_cluster_id=C113 | |coexpression_cluster_id=C113 | ||
|description=CAGE_peak_at_chr15:55806847..55806854,- | |description=CAGE_peak_at_chr15:55806847..55806854,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002368!1.80e-07!13 | |ontology_enrichment_celltype=CL:0002368!1.80e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0000322;5.96e-34;3!CL:0002202;2.45e-12;9!CL:0002632;2.45e-12;9!CL:0002368;5.70e-09;13 | |ontology_enrichment_celltype_v019=CL:0000322;5.96e-34;3!CL:0002202;2.45e-12;9!CL:0002632;2.45e-12;9!CL:0002368;5.70e-09;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000322,5.96e-34,3;CL:0002202,2.45e-12,9;CL:0002632,2.45e-12,9;CL:0002368,5.70e-09,13 | |||
|ontology_enrichment_development_v019=UBERON:0007123;4.21e-21;5 | |ontology_enrichment_development_v019=UBERON:0007123;4.21e-21;5 | ||
|ontology_enrichment_disease=DOID:1799!2.42e-11!1;DOID:10165!2.42e-11!1;DOID:1798!2.42e-11!1 | |ontology_enrichment_disease=DOID:1799!2.42e-11!1;DOID:10165!2.42e-11!1;DOID:1798!2.42e-11!1 | ||
|ontology_enrichment_disease_v019=DOID:3910;4.52e-50;2!DOID:3908;5.15e-21;5!DOID:1325;1.91e-15;7!DOID:3904;1.91e-15;7!DOID:3905;2.45e-12;9!DOID:1324;5.93e-08;15!DOID:0050615;1.54e-07;16 | |ontology_enrichment_disease_v019=DOID:3910;4.52e-50;2!DOID:3908;5.15e-21;5!DOID:1325;1.91e-15;7!DOID:3904;1.91e-15;7!DOID:3905;2.45e-12;9!DOID:1324;5.93e-08;15!DOID:0050615;1.54e-07;16 | ||
|ontology_enrichment_disease_v019_2=DOID:3910,4.52e-50,2;DOID:3908,5.15e-21,5;DOID:1325,1.91e-15,7;DOID:3904,1.91e-15,7;DOID:3905,2.45e-12,9;DOID:1324,5.93e-08,15;DOID:0050615,1.54e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0002048!3.08e-16!22;UBERON:0000117!3.08e-16!22;UBERON:0000171!3.08e-16!22;UBERON:0000170!3.08e-16!22;UBERON:0005597!3.08e-16!22;UBERON:0000118!3.08e-16!22;UBERON:0002171!1.78e-11!1;UBERON:0006518!1.78e-11!1;UBERON:0008949!1.78e-11!1;UBERON:0000101!1.78e-11!1;UBERON:0002167!1.78e-11!1;UBERON:0000065!3.35e-11!53;UBERON:0005178!2.31e-10!34;UBERON:0002224!2.31e-10!34;UBERON:0005181!4.69e-10!35;UBERON:0005153!1.73e-09!37;UBERON:0008947!3.16e-09!38;UBERON:0003258!3.16e-09!38;UBERON:0002046!3.83e-09!5;UBERON:0004117!3.83e-09!5;UBERON:0007689!3.83e-09!5;UBERON:0007123!3.83e-09!5;UBERON:0003091!3.83e-09!5;UBERON:0005911!8.42e-09!82;UBERON:0001004!5.46e-08!72;UBERON:0004119!5.82e-08!169;UBERON:0000925!5.82e-08!169;UBERON:0006595!5.82e-08!169;UBERON:0005157!9.31e-07!51 | |ontology_enrichment_uberon=UBERON:0002048!3.08e-16!22;UBERON:0000117!3.08e-16!22;UBERON:0000171!3.08e-16!22;UBERON:0000170!3.08e-16!22;UBERON:0005597!3.08e-16!22;UBERON:0000118!3.08e-16!22;UBERON:0002171!1.78e-11!1;UBERON:0006518!1.78e-11!1;UBERON:0008949!1.78e-11!1;UBERON:0000101!1.78e-11!1;UBERON:0002167!1.78e-11!1;UBERON:0000065!3.35e-11!53;UBERON:0005178!2.31e-10!34;UBERON:0002224!2.31e-10!34;UBERON:0005181!4.69e-10!35;UBERON:0005153!1.73e-09!37;UBERON:0008947!3.16e-09!38;UBERON:0003258!3.16e-09!38;UBERON:0002046!3.83e-09!5;UBERON:0004117!3.83e-09!5;UBERON:0007689!3.83e-09!5;UBERON:0007123!3.83e-09!5;UBERON:0003091!3.83e-09!5;UBERON:0005911!8.42e-09!82;UBERON:0001004!5.46e-08!72;UBERON:0004119!5.82e-08!169;UBERON:0000925!5.82e-08!169;UBERON:0006595!5.82e-08!169;UBERON:0005157!9.31e-07!51 | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;4.52e-50;2!UBERON:0002173;4.52e-50;2!UBERON:0002186;4.52e-50;2!UBERON:0004821;5.96e-34;3!UBERON:0007499;5.96e-34;3!UBERON:0003215;5.96e-34;3!UBERON:0010368;5.96e-34;3!UBERON:0009911;5.96e-34;3!UBERON:0002299;5.96e-34;3!UBERON:0006524;5.96e-34;3!UBERON:0008874;5.96e-34;3!UBERON:0002169;5.96e-34;3!UBERON:0004894;5.96e-34;3!UBERON:0009856;7.14e-26;4!UBERON:0002046;4.21e-21;5!UBERON:0000058;3.02e-11;10!UBERON:0007196;5.93e-08;15!UBERON:0001558;5.93e-08;15 | |ontology_enrichment_uberon_v019=UBERON:0004903;4.52e-50;2!UBERON:0002173;4.52e-50;2!UBERON:0002186;4.52e-50;2!UBERON:0004821;5.96e-34;3!UBERON:0007499;5.96e-34;3!UBERON:0003215;5.96e-34;3!UBERON:0010368;5.96e-34;3!UBERON:0009911;5.96e-34;3!UBERON:0002299;5.96e-34;3!UBERON:0006524;5.96e-34;3!UBERON:0008874;5.96e-34;3!UBERON:0002169;5.96e-34;3!UBERON:0004894;5.96e-34;3!UBERON:0009856;7.14e-26;4!UBERON:0002046;4.21e-21;5!UBERON:0000058;3.02e-11;10!UBERON:0007196;5.93e-08;15!UBERON:0001558;5.93e-08;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,4.52e-50,2;UBERON:0002173,4.52e-50,2;UBERON:0002186,4.52e-50,2;UBERON:0004821,5.96e-34,3;UBERON:0003215,5.96e-34,3;UBERON:0010368,5.96e-34,3;UBERON:0009911,5.96e-34,3;UBERON:0002299,5.96e-34,3;UBERON:0006524,5.96e-34,3;UBERON:0008874,5.96e-34,3;UBERON:0002169,5.96e-34,3;UBERON:0004894,5.96e-34,3;UBERON:0002046,4.21e-21,5;UBERON:0004117,4.21e-21,5;UBERON:0007689,4.21e-21,5;UBERON:0007123,4.21e-21,5;UBERON:0003091,4.21e-21,5;UBERON:0009722,2.16e-10,11;UBERON:0007690,2.16e-10,11;UBERON:0007196,5.93e-08,15;UBERON:0001558,5.93e-08,15;UBERON:0008814,7.18e-07,18 | |||
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|short_description=p@chr15:55806847..55806854,- | |short_description=p@chr15:55806847..55806854,- | ||
}} | }} |
Latest revision as of 02:40, 25 July 2015
Short description: | p@chr15:55806847..55806854, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr15:55806847..55806854, - |
Coexpression cluster: | C113_thyroid_throat_lung_lymph_small_colon_trachea |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 5.96e-34 | 3 |
epithelial cell of tracheobronchial tree | 2.45e-12 | 9 |
epithelial cell of lower respiratory tract | 2.45e-12 | 9 |
respiratory epithelial cell | 5.70e-09 | 13 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 4.52e-50 | 2 |
alveolar duct | 4.52e-50 | 2 |
bronchiole | 4.52e-50 | 2 |
pulmonary alveolus epithelium | 5.96e-34 | 3 |
alveolus | 5.96e-34 | 3 |
pulmonary lobule | 5.96e-34 | 3 |
lobule | 5.96e-34 | 3 |
alveolus of lung | 5.96e-34 | 3 |
alveolar system | 5.96e-34 | 3 |
pulmonary acinus | 5.96e-34 | 3 |
alveolar sac | 5.96e-34 | 3 |
alveolar wall | 5.96e-34 | 3 |
thyroid gland | 4.21e-21 | 5 |
pharyngeal pouch | 4.21e-21 | 5 |
thyroid diverticulum | 4.21e-21 | 5 |
pharyngeal pouch 2 | 4.21e-21 | 5 |
thyroid primordium | 4.21e-21 | 5 |
entire pharyngeal arch endoderm | 2.16e-10 | 11 |
early pharyngeal endoderm | 2.16e-10 | 11 |
tracheobronchial tree | 5.93e-08 | 15 |
lower respiratory tract | 5.93e-08 | 15 |
pharyngeal arch system | 7.18e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 4.52e-50 | 2 |
non-small cell lung carcinoma | 5.15e-21 | 5 |
bronchus cancer | 1.91e-15 | 7 |
bronchogenic carcinoma | 1.91e-15 | 7 |
lung carcinoma | 2.45e-12 | 9 |
lung cancer | 5.93e-08 | 15 |
respiratory system cancer | 1.54e-07 | 16 |