FFCP PHASE1:Hg19::chr12:52431016..52431071,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3164 | |EntrezGene=3164 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7980 | |HGNC=7980 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000553200_5end | |association_with_transcript=0bp_to_ENST00000553200_5end | ||
|cluster_id=chr12:52431016..52431071,+ | |||
|description=CAGE_peak_4_at_NR4A1_5end | |description=CAGE_peak_4_at_NR4A1_5end | ||
|id=chr12:52431016..52431071,+ | |id=chr12:52431016..52431071,+ | ||
|ontology_enrichment_celltype=CL:0002057!3.94e-16!42;CL:0000860!1.06e-13!45;CL:0000557!3.03e-09!71;CL:0000766!7.32e-09!76;CL:0000839!2.29e-07!70;CL:0000148!4.24e-07!10;CL:0000541!4.24e-07!10;CL:0002009!8.48e-07!65 | |ontology_enrichment_celltype=CL:0002057!3.94e-16!42;CL:0000860!1.06e-13!45;CL:0000557!3.03e-09!71;CL:0000766!7.32e-09!76;CL:0000839!2.29e-07!70;CL:0000148!4.24e-07!10;CL:0000541!4.24e-07!10;CL:0002009!8.48e-07!65 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.72e-11;33!CL:0002057;1.72e-11;33!CL:0000148;1.34e-10;10!CL:0000766;7.71e-10;69!CL:0000576;5.06e-09;48!CL:0000473;4.46e-08;39!CL:0000234;4.46e-08;39!CL:0000097;2.27e-07;5!CL:0000147;9.54e-07;14 | |ontology_enrichment_celltype_v019=CL:0000860;1.72e-11;33!CL:0002057;1.72e-11;33!CL:0000148;1.34e-10;10!CL:0000766;7.71e-10;69!CL:0000576;5.06e-09;48!CL:0000473;4.46e-08;39!CL:0000234;4.46e-08;39!CL:0000097;2.27e-07;5!CL:0000147;9.54e-07;14 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.43e-18,42;CL:0002057,1.43e-18,42;CL:0000766,8.36e-18,72;CL:0000557,1.09e-17,67;CL:0000473,4.18e-16,48;CL:0000234,4.18e-16,48;CL:0000839,9.33e-15,66;CL:0002009,3.50e-13,61;CL:0002194,1.07e-11,59;CL:0000576,1.07e-11,59;CL:0000040,1.07e-11,59;CL:0000559,1.07e-11,59;CL:0000148,1.24e-10,10;CL:0000541,1.24e-10,10;CL:0000763,5.39e-10,108;CL:0000049,5.39e-10,108;CL:0000738,1.37e-08,136;CL:0002393,5.62e-08,9;CL:0002397,5.62e-08,9;CL:0000097,2.07e-07,5;CL:0002028,2.07e-07,5;CL:0000147,9.01e-07,14 | |||
|ontology_enrichment_development_v019=CL:0002057;1.68e-13;42 | |ontology_enrichment_development_v019=CL:0002057;1.68e-13;42 | ||
|ontology_enrichment_disease=DOID:3095!1.81e-07!22;DOID:2994!1.81e-07!22 | |ontology_enrichment_disease=DOID:3095!1.81e-07!22;DOID:2994!1.81e-07!22 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.37e-11!115;UBERON:0001474!7.71e-09!86;UBERON:0002371!4.59e-08!80;UBERON:0004765!1.05e-07!101;UBERON:0001434!1.05e-07!101;UBERON:0000062!1.09e-07!511;UBERON:0000073!6.79e-07!94;UBERON:0001016!6.79e-07!94 | |ontology_enrichment_uberon=UBERON:0007023!4.37e-11!115;UBERON:0001474!7.71e-09!86;UBERON:0002371!4.59e-08!80;UBERON:0004765!1.05e-07!101;UBERON:0001434!1.05e-07!101;UBERON:0000062!1.09e-07!511;UBERON:0000073!6.79e-07!94;UBERON:0001016!6.79e-07!94 | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;2.33e-07;49 | |ontology_enrichment_uberon_v019=UBERON:0000922;2.33e-07;49 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.37e-15,76;UBERON:0001474,2.92e-15,82;UBERON:0002390,1.57e-13,98;UBERON:0003061,1.57e-13,98;UBERON:0004765,1.18e-12,90;UBERON:0002405,1.52e-12,93;UBERON:0001434,2.26e-11,100;UBERON:0002193,6.24e-11,108 | |||
|phase1_expression=1.09007027562334,0.428201047781966,1.55049844505568,0,0.446961094427288,0,0,0,0,0,1.39560233594486,0,0,0.866364470720326,0.331397375727916,0,0,0,0,0,0,0,0.286235987131057,0.273748850145768,0.502170558379211,0.152826811495903,0.164201178899891,0.236132343941038,2.75354993794233,2.68680578668049,17.1845896880844,0,0,0,0,0,1.17440175733939,8.30993112797816,5.61524452916397,3.47217393145363,0,0,0,0.290796477559129,0.755751887377619,0.485168122375632,5.57829688573643,8.63452564845834,11.4591357231188,1.7261543539329,3.07392847834921,1.41889337933151,6.20542225325913,23.8829332926016,8.12558919566051,5.83551252582075,4.91231070104122,6.74170453335254,15.610278510916,9.62787081228281,11.5080682643827,0,0.997318288108159,0,1.7412554317715,3.40431134814684,3.11411124497787,2.00998932205395,0.521482918420201,2.17188844705117,0.605399502633369,4.41933163185078,2.21523671208619,1.69004229049553,1.70083439972035,1.25795187305026,0.336985893439485,0.600707571366025,0.48217676009124,1.99508920618874,1.39241674039363,1.27864907635244,0,0,0,0.853460445133014,0.400395987036012,0,0,0,1.70763890732835,4.11066032559657,4.96955196562797,6.60856642895129,39.2355994087075,0,0.196709770113833,0.786021525498329,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0.144824403882799,0,0,0.255725123687061,0.361439152384566,0.50133791063589,1.88300474649071,0,0.973269740605272,0.378139268656271,0.443458794925128,0.263504357079378,2.03017567021455,0,0,0,0,0,2.14641561874808,0.571994910780128,0.74291500265913,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.949265659568129,0,2.63560834872127,0,0,0,0.506522046658319,0.132409180813219,0.860509862246441,0.709336764396714,0,0,0,0,0.269421344139376,0,0,0,0,0.312160076830321,0,0.448346041655403,0,0,0,0,0,0,0,0.247266929278557,0.910161361938026,0,0,0.125118519871964,0,0.438977620880838,0,1.95309476578576,0.226864366320042,0.358779271377724,0,0,0.600182192168805,0,0.257640540045629,0.37223371266318,0.337552664482532,0.194874010322397,0,0.0920498986422993,0,0.355009592516614,0.10075209822764,0.169560592310488,0,0,0,3.53723747775827,1.06023814657188,2.90484857173796,1.96956004529204,2.01856680700503,1.09493207722749,0,0,0,0,0,0,0.337169380156203,0,0.441175890929576,0.871517776369625,0.474541238222193,0.539325232640658,0.784885860501384,1.53898862778556,0,1.40241773803446,0.4115740113314,2.94017422771084,0,0,0.590789906681404,0,0.737930631258681,0.514703430895577,0,1.1240175325762,0.201057944823262,0,0,0,0,0,0.469634776943287,0.144366447761074,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,10.8385912337108,3.96217953059517,27.3673112513819,20.1767934783746,20.9562439487791,5.96880206346389,15.2795370223311,5.86087236050235,5.13217338068116,5.03854714246285,4.80548892550268,1.14330573052231,0.112131084345361,0,0,0,0,0,1.06375246633948,0,0,1.41849132023278,0.266422179016099,0.428933980974443,0,0,0,0.710783897485092,0,0,0.871533458600294,0,0,0,2.10833939483032,0.239624855491583,0,0,0,0.205476322550383,0,0,0.591092280605782,0.431255149719035,0.641715181398742,0.76228387266739,1.30139853857622,3.09315525111078,0.670065061337395,2.55175500661265,0,2.99161459204025,0,0.613457458595699,0,0,0.207970861530807,0.535286966391485,0.157702415033935,0.234282829985426,0,0,0,0,0.737476674166813,0.0868836144680828,0.195801157462741,0.343143423810856,1.6541442089831,3.23571301227925,2.34800627167578,0,0,0.30239029332968,0.496215615637554,0.61384789315225,0,0.128139149255701,0,1.12597744800525,1.48418066444991,0,0,0,0,0.116210378459959,4.10922128611516,0,0.0920809889358963,0.114814448164607,0,0.393373244878272,0,0.15403067420883,0.784349769176855,0,0,0,0,0.215915916102139,0,0.270946437543853,1.50506932156456,0.254876273045038,1.66215201785745,0.223874754722178,0,0,0.256450125116389,0,0.325378394664303,1.23649213977267,0.27470839445503,0.165018999841176,0,0,0,0.096670718292122,0.308097234229289,0.307007349452259,0.413509717453592,0,0,0.255679882248303,0.0890320356467374,0,0,0,0,0,0,0,0,0,0.869932992075073,0.37064843820784,0,0.372158369359667,0,0,0.255897791311334,0,0,0.78494864019923,0.179872457583315,0,0.117812402345686,0,0,0,0.975267478179181,0,1.05650146756755,0,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0.294747123039363,0,0,1.47775344708365,0,0,0.349934720244983,0,0,0,0.847294206991012,0,0,0,0,0,0,0,0,0,0,0,0,1.06824071127473,1.92495971052672,0.735120647943095,1.85803175125719,0.432807638929335,0.640276590135727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,0,0,1.4098700508785,1.49712432326576,0.73254089635947,0.36408156524854,0,0,0.71623345421307,0.593929361665277,0.614321404198464,0,0.562677665642051,0.779160935160341,0,0.844501632511974,3.98495976502139,1.38141957765574,0,0.102268682502155,3.20020494198781,0,0,0.179021174675609,0,1.479651084554,0,0,3.87733098438087,0.834912883456661,0,0.260427761085233,0.0874599999961957,0.724999575434793,0,0.254253650292766,0,0.689486746482929,1.45802306691627,0.347249989866585,0.885741385813839,0.48238575450163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| ||
|short_description=p4@NR4A1 | |short_description=p4@NR4A1 | ||
}} | }} |
Latest revision as of 21:04, 18 September 2015
Short description: | p4@NR4A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NR4A1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000553200_5end |
EntrezGene: | NR4A1 |
HGNC: | 7980 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.43e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.43e-18 | 42 |
myeloid leukocyte | 8.36e-18 | 72 |
granulocyte monocyte progenitor cell | 1.09e-17 | 67 |
defensive cell | 4.18e-16 | 48 |
phagocyte | 4.18e-16 | 48 |
myeloid lineage restricted progenitor cell | 9.33e-15 | 66 |
macrophage dendritic cell progenitor | 3.50e-13 | 61 |
monopoietic cell | 1.07e-11 | 59 |
monocyte | 1.07e-11 | 59 |
monoblast | 1.07e-11 | 59 |
promonocyte | 1.07e-11 | 59 |
melanocyte | 1.24e-10 | 10 |
melanoblast | 1.24e-10 | 10 |
myeloid cell | 5.39e-10 | 108 |
common myeloid progenitor | 5.39e-10 | 108 |
leukocyte | 1.37e-08 | 136 |
intermediate monocyte | 5.62e-08 | 9 |
CD14-positive, CD16-positive monocyte | 5.62e-08 | 9 |
mast cell | 2.07e-07 | 5 |
basophil mast progenitor cell | 2.07e-07 | 5 |
pigment cell | 9.01e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.37e-15 | 76 |
bone element | 2.92e-15 | 82 |
hematopoietic system | 1.57e-13 | 98 |
blood island | 1.57e-13 | 98 |
skeletal element | 1.18e-12 | 90 |
immune system | 1.52e-12 | 93 |
skeletal system | 2.26e-11 | 100 |
hemolymphoid system | 6.24e-11 | 108 |