FFCP PHASE1:Hg19::chr5:133512654..133512673,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6500 | |EntrezGene=6500 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10899 | |HGNC=10899 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000522552_5end | |association_with_transcript=0bp_to_ENST00000522552_5end | ||
|cluster_id=chr5:133512654..133512673,- | |||
|description=CAGE_peak_3_at_SKP1_5end | |description=CAGE_peak_3_at_SKP1_5end | ||
|id=chr5:133512654..133512673,- | |id=chr5:133512654..133512673,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.14e-07;82 | |ontology_enrichment_development_v019=UBERON:0006601;6.14e-07;82 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.30e-30!94;UBERON:0001016!4.30e-30!94;UBERON:0005743!4.90e-30!86;UBERON:0001017!1.15e-29!82;UBERON:0000955!7.89e-25!69;UBERON:0006238!7.89e-25!69;UBERON:0001049!1.48e-24!57;UBERON:0005068!1.48e-24!57;UBERON:0006241!1.48e-24!57;UBERON:0007135!1.48e-24!57;UBERON:0002616!5.63e-24!59;UBERON:0002780!5.89e-22!41;UBERON:0001890!5.89e-22!41;UBERON:0006240!5.89e-22!41;UBERON:0003075!9.07e-22!86;UBERON:0007284!9.07e-22!86;UBERON:0002346!2.27e-21!90;UBERON:0007023!2.70e-21!115;UBERON:0003080!3.61e-21!42;UBERON:0001893!1.44e-18!34;UBERON:0002020!1.71e-18!34;UBERON:0003528!1.71e-18!34;UBERON:0004121!5.10e-18!169;UBERON:0000924!5.28e-18!173;UBERON:0006601!5.28e-18!173;UBERON:0002791!6.37e-18!33;UBERON:0001869!1.08e-17!32;UBERON:0000033!1.13e-17!123;UBERON:0003056!2.75e-17!61;UBERON:0000153!1.77e-15!129;UBERON:0007811!1.77e-15!129;UBERON:0000956!5.25e-14!25;UBERON:0000203!5.25e-14!25;UBERON:0002619!1.13e-13!22;UBERON:0001950!1.80e-12!20 | |ontology_enrichment_uberon=UBERON:0000073!4.30e-30!94;UBERON:0001016!4.30e-30!94;UBERON:0005743!4.90e-30!86;UBERON:0001017!1.15e-29!82;UBERON:0000955!7.89e-25!69;UBERON:0006238!7.89e-25!69;UBERON:0001049!1.48e-24!57;UBERON:0005068!1.48e-24!57;UBERON:0006241!1.48e-24!57;UBERON:0007135!1.48e-24!57;UBERON:0002616!5.63e-24!59;UBERON:0002780!5.89e-22!41;UBERON:0001890!5.89e-22!41;UBERON:0006240!5.89e-22!41;UBERON:0003075!9.07e-22!86;UBERON:0007284!9.07e-22!86;UBERON:0002346!2.27e-21!90;UBERON:0007023!2.70e-21!115;UBERON:0003080!3.61e-21!42;UBERON:0001893!1.44e-18!34;UBERON:0002020!1.71e-18!34;UBERON:0003528!1.71e-18!34;UBERON:0004121!5.10e-18!169;UBERON:0000924!5.28e-18!173;UBERON:0006601!5.28e-18!173;UBERON:0002791!6.37e-18!33;UBERON:0001869!1.08e-17!32;UBERON:0000033!1.13e-17!123;UBERON:0003056!2.75e-17!61;UBERON:0000153!1.77e-15!129;UBERON:0007811!1.77e-15!129;UBERON:0000956!5.25e-14!25;UBERON:0000203!5.25e-14!25;UBERON:0002619!1.13e-13!22;UBERON:0001950!1.80e-12!20 | ||
|ontology_enrichment_uberon_v019=UBERON:0001893;3.86e-16;34!UBERON:0003528;5.53e-16;34!UBERON:0002020;5.53e-16;34!UBERON:0001869;6.11e-16;32!UBERON:0002791;9.02e-16;32!UBERON:0002780;1.01e-15;41!UBERON:0001890;1.01e-15;41!UBERON:0000073;2.00e-14;53!UBERON:0002616;2.00e-14;53!UBERON:0000956;5.09e-14;25!UBERON:0000203;5.09e-14;25!UBERON:0002619;1.14e-13;22!UBERON:0000955;8.99e-13;68!UBERON:0001017;1.59e-12;75!UBERON:0001950;1.82e-12;20!UBERON:0001016;1.79e-11;83 | |ontology_enrichment_uberon_v019=UBERON:0001893;3.86e-16;34!UBERON:0003528;5.53e-16;34!UBERON:0002020;5.53e-16;34!UBERON:0001869;6.11e-16;32!UBERON:0002791;9.02e-16;32!UBERON:0002780;1.01e-15;41!UBERON:0001890;1.01e-15;41!UBERON:0000073;2.00e-14;53!UBERON:0002616;2.00e-14;53!UBERON:0000956;5.09e-14;25!UBERON:0000203;5.09e-14;25!UBERON:0002619;1.14e-13;22!UBERON:0000955;8.99e-13;68!UBERON:0001017;1.59e-12;75!UBERON:0001950;1.82e-12;20!UBERON:0001016;1.79e-11;83 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.86e-30,81;UBERON:0001016,3.19e-30,89;UBERON:0000955,1.98e-25,68;UBERON:0006238,1.98e-25,68;UBERON:0001049,2.96e-25,56;UBERON:0005068,2.96e-25,56;UBERON:0006241,2.96e-25,56;UBERON:0007135,2.96e-25,56;UBERON:0000073,1.28e-23,53;UBERON:0002616,1.28e-23,53;UBERON:0003075,1.03e-22,82;UBERON:0007284,1.03e-22,82;UBERON:0002346,2.99e-22,86;UBERON:0002780,5.89e-22,41;UBERON:0001890,5.89e-22,41;UBERON:0003080,5.89e-22,41;UBERON:0006240,5.89e-22,41;UBERON:0007023,8.94e-21,114;UBERON:0010314,6.97e-20,132;UBERON:0004121,2.84e-19,171;UBERON:0000924,2.84e-19,171;UBERON:0006601,2.84e-19,171;UBERON:0001893,1.44e-18,34;UBERON:0003528,1.71e-18,34;UBERON:0002020,1.71e-18,34;UBERON:0003056,6.31e-18,61;UBERON:0001869,1.08e-17,32;UBERON:0002791,1.73e-17,32;UBERON:0010371,1.23e-16,104;UBERON:0000956,5.25e-14,25;UBERON:0000203,5.25e-14,25;UBERON:0002619,1.13e-13,22;UBERON:0001950,1.80e-12,20 | |||
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| ||
|short_description=p3@SKP1 | |short_description=p3@SKP1 | ||
}} | }} |
Latest revision as of 08:17, 20 September 2015
Short description: | p3@SKP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SKP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000522552_5end |
EntrezGene: | SKP1 |
HGNC: | 10899 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.86e-30 | 81 |
nervous system | 3.19e-30 | 89 |
brain | 1.98e-25 | 68 |
future brain | 1.98e-25 | 68 |
neural tube | 2.96e-25 | 56 |
neural rod | 2.96e-25 | 56 |
future spinal cord | 2.96e-25 | 56 |
neural keel | 2.96e-25 | 56 |
regional part of nervous system | 1.28e-23 | 53 |
regional part of brain | 1.28e-23 | 53 |
neural plate | 1.03e-22 | 82 |
presumptive neural plate | 1.03e-22 | 82 |
neurectoderm | 2.99e-22 | 86 |
regional part of forebrain | 5.89e-22 | 41 |
forebrain | 5.89e-22 | 41 |
anterior neural tube | 5.89e-22 | 41 |
future forebrain | 5.89e-22 | 41 |
adult organism | 8.94e-21 | 114 |
structure with developmental contribution from neural crest | 6.97e-20 | 132 |
ectoderm-derived structure | 2.84e-19 | 171 |
ectoderm | 2.84e-19 | 171 |
presumptive ectoderm | 2.84e-19 | 171 |
telencephalon | 1.44e-18 | 34 |
brain grey matter | 1.71e-18 | 34 |
gray matter | 1.71e-18 | 34 |
pre-chordal neural plate | 6.31e-18 | 61 |
cerebral hemisphere | 1.08e-17 | 32 |
regional part of telencephalon | 1.73e-17 | 32 |
ecto-epithelium | 1.23e-16 | 104 |
cerebral cortex | 5.25e-14 | 25 |
pallium | 5.25e-14 | 25 |
regional part of cerebral cortex | 1.13e-13 | 22 |
neocortex | 1.80e-12 | 20 |