FFCP PHASE1:Hg19::chr1:163038669..163038763,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5999 | |EntrezGene=5999 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10000 | |HGNC=10000 | ||
|TSSclassifier=strong | |||
|UniProt=A7XA58,P49798 | |UniProt=A7XA58,P49798 | ||
|association_with_transcript=0bp_to_ENST00000527393,NM_005613,uc009wuy.2_5end | |association_with_transcript=0bp_to_ENST00000527393,NM_005613,uc009wuy.2_5end | ||
|cluster_id=chr1:163038669..163038763,+ | |||
|coexpression_cluster_id=C3897 | |coexpression_cluster_id=C3897 | ||
|description=CAGE_peak_2_at_RGS4_5end | |description=CAGE_peak_2_at_RGS4_5end | ||
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|ontology_enrichment_celltype=CL:0000359!5.31e-21!32;CL:0000192!5.50e-16!42;CL:0000514!5.50e-16!42;CL:0000680!4.04e-13!57;CL:0000056!4.04e-13!57;CL:0000355!4.04e-13!57;CL:0000183!7.86e-13!59;CL:0000187!9.13e-13!54;CL:0000055!1.02e-12!180;CL:0000393!6.97e-11!60;CL:0000211!6.97e-11!60;CL:0002539!3.10e-07!10;CL:0000057!3.83e-07!75 | |ontology_enrichment_celltype=CL:0000359!5.31e-21!32;CL:0000192!5.50e-16!42;CL:0000514!5.50e-16!42;CL:0000680!4.04e-13!57;CL:0000056!4.04e-13!57;CL:0000355!4.04e-13!57;CL:0000183!7.86e-13!59;CL:0000187!9.13e-13!54;CL:0000055!1.02e-12!180;CL:0000393!6.97e-11!60;CL:0000211!6.97e-11!60;CL:0002539!3.10e-07!10;CL:0000057!3.83e-07!75 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.98e-24;32!CL:0000192;1.38e-13;43!CL:0002539;1.01e-10;10!CL:1000306;6.22e-08;4!CL:0002547;6.22e-08;4 | |ontology_enrichment_celltype_v019=CL:0000359;1.98e-24;32!CL:0000192;1.38e-13;43!CL:0002539;1.01e-10;10!CL:1000306;6.22e-08;4!CL:0002547;6.22e-08;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000359,7.72e-26,32;CL:0000192,1.91e-17,43;CL:0000514,1.91e-17,43;CL:0000680,2.35e-12,58;CL:0000056,2.35e-12,58;CL:0000355,2.35e-12,58;CL:0000187,3.33e-12,55;CL:0002539,1.02e-10,10;CL:0000393,2.17e-10,61;CL:0000211,2.17e-10,61;CL:1000306,4.90e-08,4;CL:0002547,4.90e-08,4 | |||
|ontology_enrichment_development_v019=CL:0000514;1.38e-13;43 | |ontology_enrichment_development_v019=CL:0000514;1.38e-13;43 | ||
|ontology_enrichment_disease=DOID:2394!1.61e-10!14 | |ontology_enrichment_disease=DOID:2394!1.61e-10!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;2.17e-14;14!DOID:193;2.77e-08;29!DOID:120;1.15e-07;27 | |ontology_enrichment_disease_v019=DOID:2394;2.17e-14;14!DOID:193;2.77e-08;29!DOID:120;1.15e-07;27 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,1.63e-14,14;DOID:193,2.40e-08,29;DOID:120,9.97e-08,27 | |||
|ontology_enrichment_uberon=UBERON:0001637!1.17e-21!42;UBERON:0003509!1.17e-21!42;UBERON:0004572!1.17e-21!42;UBERON:0004573!1.27e-18!33;UBERON:0004571!1.27e-18!33;UBERON:0002616!2.21e-18!59;UBERON:0000025!6.93e-18!194;UBERON:0000955!9.66e-17!69;UBERON:0006238!9.66e-17!69;UBERON:0000073!1.93e-16!94;UBERON:0001016!1.93e-16!94;UBERON:0001049!3.01e-16!57;UBERON:0005068!3.01e-16!57;UBERON:0006241!3.01e-16!57;UBERON:0007135!3.01e-16!57;UBERON:0001981!5.55e-16!60;UBERON:0007500!5.55e-16!60;UBERON:0004537!5.55e-16!60;UBERON:0006965!5.55e-16!60;UBERON:0005743!6.49e-16!86;UBERON:0003075!1.52e-15!86;UBERON:0007284!1.52e-15!86;UBERON:0001017!2.23e-15!82;UBERON:0002049!5.99e-15!79;UBERON:0007798!5.99e-15!79;UBERON:0002780!3.61e-14!41;UBERON:0001890!3.61e-14!41;UBERON:0006240!3.61e-14!41;UBERON:0002346!4.65e-14!90;UBERON:0001869!5.12e-14!32;UBERON:0001893!1.16e-13!34;UBERON:0002619!1.32e-13!22;UBERON:0003080!1.43e-13!42;UBERON:0000055!1.52e-13!69;UBERON:0004872!1.59e-13!84;UBERON:0002020!1.66e-13!34;UBERON:0003528!1.66e-13!34;UBERON:0002791!8.11e-13!33;UBERON:0000119!1.04e-12!312;UBERON:0004111!1.20e-12!241;UBERON:0001950!2.55e-12!20;UBERON:0000483!3.32e-12!309;UBERON:0001134!2.08e-11!61;UBERON:0002036!2.08e-11!61;UBERON:0003082!2.08e-11!61;UBERON:0002385!2.17e-11!63;UBERON:0001015!2.17e-11!63;UBERON:0000383!2.17e-11!63;UBERON:0003056!3.46e-11!61;UBERON:0000033!3.47e-11!123;UBERON:0000956!3.84e-11!25;UBERON:0000203!3.84e-11!25;UBERON:0004535!6.76e-11!110;UBERON:0000477!8.31e-11!286;UBERON:0000475!9.57e-11!365;UBERON:0000947!1.04e-10!21;UBERON:0010191!1.04e-10!21;UBERON:0000153!2.77e-10!129;UBERON:0007811!2.77e-10!129;UBERON:0001009!3.77e-10!113;UBERON:0004290!1.21e-09!70;UBERON:0000914!1.46e-09!83;UBERON:0002329!1.46e-09!83;UBERON:0003077!1.46e-09!83;UBERON:0003059!1.46e-09!83;UBERON:0007282!1.46e-09!83;UBERON:0009618!1.46e-09!83;UBERON:0007285!1.46e-09!83;UBERON:0007023!4.13e-09!115;UBERON:0004121!2.72e-08!169;UBERON:0000481!7.35e-08!347;UBERON:0003914!1.06e-07!118;UBERON:0000924!1.15e-07!173;UBERON:0006601!1.15e-07!173;UBERON:0004237!3.10e-07!10;UBERON:0004695!3.10e-07!10;UBERON:0002111!3.10e-07!10;UBERON:0004178!3.10e-07!10;UBERON:0000200!3.80e-07!6 | |ontology_enrichment_uberon=UBERON:0001637!1.17e-21!42;UBERON:0003509!1.17e-21!42;UBERON:0004572!1.17e-21!42;UBERON:0004573!1.27e-18!33;UBERON:0004571!1.27e-18!33;UBERON:0002616!2.21e-18!59;UBERON:0000025!6.93e-18!194;UBERON:0000955!9.66e-17!69;UBERON:0006238!9.66e-17!69;UBERON:0000073!1.93e-16!94;UBERON:0001016!1.93e-16!94;UBERON:0001049!3.01e-16!57;UBERON:0005068!3.01e-16!57;UBERON:0006241!3.01e-16!57;UBERON:0007135!3.01e-16!57;UBERON:0001981!5.55e-16!60;UBERON:0007500!5.55e-16!60;UBERON:0004537!5.55e-16!60;UBERON:0006965!5.55e-16!60;UBERON:0005743!6.49e-16!86;UBERON:0003075!1.52e-15!86;UBERON:0007284!1.52e-15!86;UBERON:0001017!2.23e-15!82;UBERON:0002049!5.99e-15!79;UBERON:0007798!5.99e-15!79;UBERON:0002780!3.61e-14!41;UBERON:0001890!3.61e-14!41;UBERON:0006240!3.61e-14!41;UBERON:0002346!4.65e-14!90;UBERON:0001869!5.12e-14!32;UBERON:0001893!1.16e-13!34;UBERON:0002619!1.32e-13!22;UBERON:0003080!1.43e-13!42;UBERON:0000055!1.52e-13!69;UBERON:0004872!1.59e-13!84;UBERON:0002020!1.66e-13!34;UBERON:0003528!1.66e-13!34;UBERON:0002791!8.11e-13!33;UBERON:0000119!1.04e-12!312;UBERON:0004111!1.20e-12!241;UBERON:0001950!2.55e-12!20;UBERON:0000483!3.32e-12!309;UBERON:0001134!2.08e-11!61;UBERON:0002036!2.08e-11!61;UBERON:0003082!2.08e-11!61;UBERON:0002385!2.17e-11!63;UBERON:0001015!2.17e-11!63;UBERON:0000383!2.17e-11!63;UBERON:0003056!3.46e-11!61;UBERON:0000033!3.47e-11!123;UBERON:0000956!3.84e-11!25;UBERON:0000203!3.84e-11!25;UBERON:0004535!6.76e-11!110;UBERON:0000477!8.31e-11!286;UBERON:0000475!9.57e-11!365;UBERON:0000947!1.04e-10!21;UBERON:0010191!1.04e-10!21;UBERON:0000153!2.77e-10!129;UBERON:0007811!2.77e-10!129;UBERON:0001009!3.77e-10!113;UBERON:0004290!1.21e-09!70;UBERON:0000914!1.46e-09!83;UBERON:0002329!1.46e-09!83;UBERON:0003077!1.46e-09!83;UBERON:0003059!1.46e-09!83;UBERON:0007282!1.46e-09!83;UBERON:0009618!1.46e-09!83;UBERON:0007285!1.46e-09!83;UBERON:0007023!4.13e-09!115;UBERON:0004121!2.72e-08!169;UBERON:0000481!7.35e-08!347;UBERON:0003914!1.06e-07!118;UBERON:0000924!1.15e-07!173;UBERON:0006601!1.15e-07!173;UBERON:0004237!3.10e-07!10;UBERON:0004695!3.10e-07!10;UBERON:0002111!3.10e-07!10;UBERON:0004178!3.10e-07!10;UBERON:0000200!3.80e-07!6 | ||
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| ||
|short_description=p2@RGS4 | |short_description=p2@RGS4 | ||
}} | }} |
Latest revision as of 07:52, 18 September 2015
Short description: | p2@RGS4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RGS4_5end |
Coexpression cluster: | C3897_Mesothelial_Multipotent_mesenchymal_Fibroblast_argyrophil_medial_leiomyoma |
Association with transcript: | 0bp_to_ENST00000527393, NM_005613, uc009wuy.2_5end |
EntrezGene: | RGS4 |
HGNC: | 10000 |
UniProt: | A7XA58P49798 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 7.72e-26 | 32 |
smooth muscle cell | 1.91e-17 | 43 |
smooth muscle myoblast | 1.91e-17 | 43 |
muscle precursor cell | 2.35e-12 | 58 |
myoblast | 2.35e-12 | 58 |
multi-potent skeletal muscle stem cell | 2.35e-12 | 58 |
muscle cell | 3.33e-12 | 55 |
aortic smooth muscle cell | 1.02e-10 | 10 |
electrically responsive cell | 2.17e-10 | 61 |
electrically active cell | 2.17e-10 | 61 |
fibroblast of tunica adventitia of artery | 4.90e-08 | 4 |
fibroblast of the aortic adventitia | 4.90e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.63e-14 | 14 |
reproductive organ cancer | 2.40e-08 | 29 |
female reproductive organ cancer | 9.97e-08 | 27 |