FFCP PHASE1:Hg19::chr17:59533618..59533656,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9496 | |EntrezGene=9496 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11603 | |HGNC=11603 | ||
|TSSclassifier=strong | |||
|UniProt=P57082 | |UniProt=P57082 | ||
|association_with_transcript=-150bp_to_ENST00000240335,NM_018488,uc002izi.2,uc010woy.1_5end | |association_with_transcript=-150bp_to_ENST00000240335,NM_018488,uc002izi.2,uc010woy.1_5end | ||
|cluster_id=chr17:59533618..59533656,+ | |||
|coexpression_cluster_id=C131 | |coexpression_cluster_id=C131 | ||
|description=CAGE_peak_2_at_TBX4_5end | |description=CAGE_peak_2_at_TBX4_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002574!3.50e-14!1;CL:0002598!7.55e-14!1;CL:0002600!1.36e-07!2 | |ontology_enrichment_celltype=CL:0002574!3.50e-14!1;CL:0002598!7.55e-14!1;CL:0002600!1.36e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002574;1.88e-50;1!CL:0002598;8.10e-26;2 | |ontology_enrichment_celltype_v019=CL:0002574;1.88e-50;1!CL:0002598;8.10e-26;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002574,2.42e-50,1;CL:0002598,7.14e-26,2 | |||
|ontology_enrichment_development_v019=UBERON:0008947;6.91e-08;29!UBERON:0001041;1.17e-07;30 | |ontology_enrichment_development_v019=UBERON:0008947;6.91e-08;29!UBERON:0001041;1.17e-07;30 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005178!1.91e-17!34;UBERON:0002224!1.91e-17!34;UBERON:0005181!6.22e-17!35;UBERON:0007196!2.08e-14!14;UBERON:0001558!2.08e-14!14;UBERON:0002171!5.85e-14!1;UBERON:0006518!5.85e-14!1;UBERON:0008949!5.85e-14!1;UBERON:0000101!5.85e-14!1;UBERON:0002167!5.85e-14!1;UBERON:0001987!3.02e-13!4;UBERON:0004340!3.02e-13!4;UBERON:0008947!1.52e-11!38;UBERON:0003258!1.52e-11!38;UBERON:0000915!3.24e-11!52;UBERON:0000065!5.42e-11!53;UBERON:0002048!1.88e-09!22;UBERON:0000117!1.88e-09!22;UBERON:0000171!1.88e-09!22;UBERON:0000170!1.88e-09!22;UBERON:0005597!1.88e-09!22;UBERON:0000118!1.88e-09!22;UBERON:0000464!9.26e-09!104;UBERON:0005177!1.75e-08!107;UBERON:0003126!5.66e-08!7;UBERON:0001005!5.66e-08!7;UBERON:0003124!5.87e-08!7;UBERON:0001004!6.25e-08!72;UBERON:0003127!2.40e-07!2;UBERON:0000466!4.85e-07!126;UBERON:0000077!9.58e-07!130 | |ontology_enrichment_uberon=UBERON:0005178!1.91e-17!34;UBERON:0002224!1.91e-17!34;UBERON:0005181!6.22e-17!35;UBERON:0007196!2.08e-14!14;UBERON:0001558!2.08e-14!14;UBERON:0002171!5.85e-14!1;UBERON:0006518!5.85e-14!1;UBERON:0008949!5.85e-14!1;UBERON:0000101!5.85e-14!1;UBERON:0002167!5.85e-14!1;UBERON:0001987!3.02e-13!4;UBERON:0004340!3.02e-13!4;UBERON:0008947!1.52e-11!38;UBERON:0003258!1.52e-11!38;UBERON:0000915!3.24e-11!52;UBERON:0000065!5.42e-11!53;UBERON:0002048!1.88e-09!22;UBERON:0000117!1.88e-09!22;UBERON:0000171!1.88e-09!22;UBERON:0000170!1.88e-09!22;UBERON:0005597!1.88e-09!22;UBERON:0000118!1.88e-09!22;UBERON:0000464!9.26e-09!104;UBERON:0005177!1.75e-08!107;UBERON:0003126!5.66e-08!7;UBERON:0001005!5.66e-08!7;UBERON:0003124!5.87e-08!7;UBERON:0001004!6.25e-08!72;UBERON:0003127!2.40e-07!2;UBERON:0000466!4.85e-07!126;UBERON:0000077!9.58e-07!130 | ||
|ontology_enrichment_uberon_v019=UBERON:0005178;1.75e-12;34!UBERON:0002224;1.75e-12;34!UBERON:0002185;3.42e-11;5!UBERON:0002048;4.53e-10;22!UBERON:0000117;4.53e-10;22!UBERON:0000171;4.53e-10;22!UBERON:0000170;4.53e-10;22!UBERON:0005181;9.02e-09;35!UBERON:0000915;6.10e-08;52!UBERON:0000065;3.63e-07;44 | |ontology_enrichment_uberon_v019=UBERON:0005178;1.75e-12;34!UBERON:0002224;1.75e-12;34!UBERON:0002185;3.42e-11;5!UBERON:0002048;4.53e-10;22!UBERON:0000117;4.53e-10;22!UBERON:0000171;4.53e-10;22!UBERON:0000170;4.53e-10;22!UBERON:0005181;9.02e-09;35!UBERON:0000915;6.10e-08;52!UBERON:0000065;3.63e-07;44 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005178,5.47e-14,34;UBERON:0002224,5.47e-14,34;UBERON:0005181,1.29e-13,35;UBERON:0002185,3.26e-11,5;UBERON:0002048,4.53e-10,22;UBERON:0000117,4.53e-10,22;UBERON:0000171,4.53e-10,22;UBERON:0000170,4.53e-10,22;UBERON:0005597,4.53e-10,22;UBERON:0000118,4.53e-10,22;UBERON:0000915,1.83e-09,52;UBERON:0000065,3.82e-09,54;UBERON:0005177,1.11e-08,101;UBERON:0001004,6.78e-07,74 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869079113764942,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21469373531907,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511795582622668,1.28381696410176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17466153824464,3.61569901729232,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869079113764942,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21469373531907,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511795582622668,1.28381696410176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17466153824464,3.61569901729232,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@TBX4 | |short_description=p2@TBX4 | ||
}} | }} |
Latest revision as of 15:24, 16 September 2015
Short description: | p2@TBX4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TBX4_5end |
Coexpression cluster: | C131_lung_trachea_Alveolar_thyroid_umbilical_throat_skin |
Association with transcript: | -150bp_to_ENST00000240335, NM_018488, uc002izi.2, uc010woy.1_5end |
EntrezGene: | TBX4 |
HGNC: | 11603 |
UniProt: | P57082 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stromal cell of pancreas | 2.42e-50 | 1 |
bronchial smooth muscle cell | 7.14e-26 | 2 |
Ontology term | p-value | n |
---|---|---|
thoracic cavity element | 5.47e-14 | 34 |
thoracic cavity | 5.47e-14 | 34 |
thoracic segment organ | 1.29e-13 | 35 |
bronchus | 3.26e-11 | 5 |
lung | 4.53e-10 | 22 |
respiratory tube | 4.53e-10 | 22 |
respiration organ | 4.53e-10 | 22 |
pair of lungs | 4.53e-10 | 22 |
lung primordium | 4.53e-10 | 22 |
lung bud | 4.53e-10 | 22 |
thoracic segment of trunk | 1.83e-09 | 52 |
respiratory tract | 3.82e-09 | 54 |
trunk region element | 1.11e-08 | 101 |
respiratory system | 6.78e-07 | 74 |