FFCP PHASE1:Hg19::chr12:15942469..15942488,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:15942469..15942488,+ | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_at_chr12:15942469..15942488,+ | |description=CAGE_peak_at_chr12:15942469..15942488,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000511;1.03e-17;1!CL:0002625;1.03e-17;1!CL:0000216;1.03e-17;1!CL:0000154;6.70e-12;6!CL:0002521;7.28e-07;3!CL:0002567;9.11e-07;3!CL:0002623;9.11e-07;3 | |ontology_enrichment_celltype_v019=CL:0000511;1.03e-17;1!CL:0002625;1.03e-17;1!CL:0000216;1.03e-17;1!CL:0000154;6.70e-12;6!CL:0002521;7.28e-07;3!CL:0002567;9.11e-07;3!CL:0002623;9.11e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000511,6.23e-18,1;CL:0002625,6.23e-18,1;CL:0000216,6.23e-18,1;CL:0000154,5.08e-12,6;CL:0002521,7.28e-07,3;CL:0002623,8.15e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.02e-07;10!UBERON:0005564;1.02e-07;10 | |ontology_enrichment_development_v019=UBERON:0009117;1.02e-07;10!UBERON:0005564;1.02e-07;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.88e-19;8!UBERON:0001136;1.03e-17;1!UBERON:0001343;1.03e-17;1!UBERON:0004910;1.03e-17;1!UBERON:0004813;1.03e-17;1!UBERON:0003135;2.46e-14;11!UBERON:0004909;1.57e-09;2!UBERON:0000991;8.66e-08;21!UBERON:0003101;1.85e-07;22!UBERON:0000079;1.85e-07;22!UBERON:0002190;7.28e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0000473;1.88e-19;8!UBERON:0001136;1.03e-17;1!UBERON:0001343;1.03e-17;1!UBERON:0004910;1.03e-17;1!UBERON:0004813;1.03e-17;1!UBERON:0003135;2.46e-14;11!UBERON:0004909;1.57e-09;2!UBERON:0000991;8.66e-08;21!UBERON:0003101;1.85e-07;22!UBERON:0000079;1.85e-07;22!UBERON:0002190;7.28e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.56e-19,8;UBERON:0001136,6.23e-18,1;UBERON:0001343,6.23e-18,1;UBERON:0004910,6.23e-18,1;UBERON:0005154,6.23e-18,1;UBERON:0005295,6.23e-18,1;UBERON:0004813,6.23e-18,1;UBERON:0005297,6.23e-18,1;UBERON:0005294,6.23e-18,1;UBERON:0010141,6.23e-18,1;UBERON:0005891,6.23e-18,1;UBERON:0003135,2.15e-14,11;UBERON:0004909,1.22e-09,2;UBERON:0000991,8.08e-08,21;UBERON:0009196,8.08e-08,21;UBERON:0009117,8.08e-08,21;UBERON:0005564,8.08e-08,21;UBERON:0004176,1.73e-07,22;UBERON:0003101,1.73e-07,22;UBERON:0000079,1.73e-07,22;UBERON:0002190,7.28e-07,3 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0.446961094427288,0,2.53299878168311,0,0.261185628199839,0,0,0,0,0.247532705920093,0,0,0,0,0,0.123121058076788,0.204000691244253,0.313454721478088,0.286235987131057,0,0.125542639594803,0.0764134057479513,0.0821005894499457,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0.377875943688809,0.242584061187816,0,0,0,0.28769239232215,0.256160706529101,0.236482229888585,0,1.29096936716765,0,0.188242339542605,0,0.224723484445085,0,0.320929027076094,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.950452044448374,0,0,1.24930726552346,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,5.37014209540622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0.24666754841716,0,0.269421344139376,0.163461903113459,0,0,0,0,0,0,0.23486899728753,0.161872944368132,0,0,0.122834317311768,0.206651562351531,1.18800285728205,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0.423863802319124,0,0,0.257640540045629,0,0.168776332241266,0.194874010322397,0,0.276149695926898,0,0,0,0,0.193260853163297,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0.721879481669586,0,0.168584690078102,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,1.17217447210047,0,0,0,0,0.112131084345361,0,0.07333828582095,0,7.15312891703765,0,0.26593811658487,0,0.257207374262142,0,0,0,1.08524321078289,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0.358121926479791,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0.542530047399471,0,0,0,0,0,0,0,0,0,0,0.783204629850962,0.343143423810856,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0.270946437543853,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0.096670718292122,0.154048617114644,0.15350367472613,0,0.107420244868274,0.145016693914229,0.0852266274161009,0.0890320356467374,0,0,0,0.10115778085555,0,0.31481234683064,0,0,0,0,0,0,0.372158369359667,0.316379424718726,0,0.255897791311334,0,0.318203247925937,0,0,0.274537029736055,0.117812402345686,0,0,0.421258456238981,0.48763373908959,0,0,0,0.141405431953713,0,0,0,0.438450885253763,0.578775534266688,0,0,0.6196469961995,0,0.143411352204052,0,0,0,0,0,0,0,0,0.670302275535787,0,0.0941438007767792,0.43050537267123,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0.111308705022906,0,0,0,0,0,0,0.123084805461069,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0.291604613383254,0,0,0,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0.415440338029185,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0.13223260174269,0,0,0.106787412567695,0,0,0,0,0.121792598380896,0,0,0,0.919036730290385,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0,0,0,0.251567901752575,0,0,0.453692771289717,0.15543720058278,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0.226705925512272,0.463044948647668,0,0.537266523244462,0,0,0.353378291891762,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.0642292250964595,0,0,0,0,0.207471757392654,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0.336283722218824,0,0,0.0887023701626388,0,0,0.135939465953663,0.0657727735628491,0,0,0.156986185701028,0,0,0,0,0.47775168788705,0.142953088353313,0,0,0,0,0.414432328326074,0.17071847709395,1.38251932362818,0,0,0,0,0,0.31020638566432,0,0.111855431797792,0,0,0,0,0,0,0,0.397901550322736,0,0,0.219881033490858,0,0,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0.0644578879735772,0,0.178553938605658,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0.534434810531121,0.275684698604535,0,10.457460354117,13.9341347681213,0,0,0,0,0,0,0,0.12729431655633,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0.181678379270557,0,0.140954404095971,0,0.446961094427288,0,2.53299878168311,0,0.261185628199839,0,0,0,0,0.247532705920093,0,0,0,0,0,0.123121058076788,0.204000691244253,0.313454721478088,0.286235987131057,0,0.125542639594803,0.0764134057479513,0.0821005894499457,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0.377875943688809,0.242584061187816,0,0,0,0.28769239232215,0.256160706529101,0.236482229888585,0,1.29096936716765,0,0.188242339542605,0,0.224723484445085,0,0.320929027076094,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.950452044448374,0,0,1.24930726552346,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,5.37014209540622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0.24666754841716,0,0.269421344139376,0.163461903113459,0,0,0,0,0,0,0.23486899728753,0.161872944368132,0,0,0.122834317311768,0.206651562351531,1.18800285728205,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0.423863802319124,0,0,0.257640540045629,0,0.168776332241266,0.194874010322397,0,0.276149695926898,0,0,0,0,0.193260853163297,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0.721879481669586,0,0.168584690078102,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,1.17217447210047,0,0,0,0,0.112131084345361,0,0.07333828582095,0,7.15312891703765,0,0.26593811658487,0,0.257207374262142,0,0,0,1.08524321078289,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0.358121926479791,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0.542530047399471,0,0,0,0,0,0,0,0,0,0,0.783204629850962,0.343143423810856,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0.270946437543853,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0.096670718292122,0.154048617114644,0.15350367472613,0,0.107420244868274,0.145016693914229,0.0852266274161009,0.0890320356467374,0,0,0,0.10115778085555,0,0.31481234683064,0,0,0,0,0,0,0.372158369359667,0.316379424718726,0,0.255897791311334,0,0.318203247925937,0,0,0.274537029736055,0.117812402345686,0,0,0.421258456238981,0.48763373908959,0,0,0,0.141405431953713,0,0,0,0.438450885253763,0.578775534266688,0,0,0.6196469961995,0,0.143411352204052,0,0,0,0,0,0,0,0,0.670302275535787,0,0.0941438007767792,0.43050537267123,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0.111308705022906,0,0,0,0,0,0,0.123084805461069,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0.291604613383254,0,0,0,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0.415440338029185,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0.13223260174269,0,0,0.106787412567695,0,0,0,0,0.121792598380896,0,0,0,0.919036730290385,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0,0,0,0.251567901752575,0,0,0.453692771289717,0.15543720058278,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0.226705925512272,0.463044948647668,0,0.537266523244462,0,0,0.353378291891762,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.0642292250964595,0,0,0,0,0.207471757392654,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0.336283722218824,0,0,0.0887023701626388,0,0,0.135939465953663,0.0657727735628491,0,0,0.156986185701028,0,0,0,0,0.47775168788705,0.142953088353313,0,0,0,0,0.414432328326074,0.17071847709395,1.38251932362818,0,0,0,0,0,0.31020638566432,0,0.111855431797792,0,0,0,0,0,0,0,0.397901550322736,0,0,0.219881033490858,0,0,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0.0644578879735772,0,0.178553938605658,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0.534434810531121,0.275684698604535,0,10.457460354117,13.9341347681213,0,0,0,0,0,0,0,0.12729431655633,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr12:15942469..15942488,+ | |short_description=p@chr12:15942469..15942488,+ | ||
}} | }} |
Latest revision as of 07:12, 24 July 2015
Short description: | p@chr12:15942469..15942488, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:15942469..15942488, + |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 6.23e-18 | 1 |
seminiferous tubule epithelial cell | 6.23e-18 | 1 |
Sertoli cell | 6.23e-18 | 1 |
protein secreting cell | 5.08e-12 | 6 |
subcutaneous fat cell | 7.28e-07 | 3 |
acinar cell of salivary gland | 8.15e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
testis | 1.56e-19 | 8 |
mesothelium | 6.23e-18 | 1 |
seminiferous tubule of testis | 6.23e-18 | 1 |
epithelium of male gonad | 6.23e-18 | 1 |
epithelial cord | 6.23e-18 | 1 |
sex cord | 6.23e-18 | 1 |
seminiferous tubule epithelium | 6.23e-18 | 1 |
testis sex cord | 6.23e-18 | 1 |
genital ridge | 6.23e-18 | 1 |
primitive sex cord of indifferent gonad | 6.23e-18 | 1 |
coelomic epithelium | 6.23e-18 | 1 |
male reproductive organ | 2.15e-14 | 11 |
epithelium of gonad | 1.22e-09 | 2 |
gonad | 8.08e-08 | 21 |
indifferent external genitalia | 8.08e-08 | 21 |
indifferent gonad | 8.08e-08 | 21 |
gonad primordium | 8.08e-08 | 21 |
external genitalia | 1.73e-07 | 22 |
male organism | 1.73e-07 | 22 |
male reproductive system | 1.73e-07 | 22 |
subcutaneous adipose tissue | 7.28e-07 | 3 |