FFCP PHASE1:Hg19::chr2:3463652..3463685,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51112 | |EntrezGene=51112 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24284 | |HGNC=24284 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-16bp_to_ENST00000461577_5end | |association_with_transcript=-16bp_to_ENST00000461577_5end | ||
|cluster_id=chr2:3463652..3463685,+ | |||
|coexpression_cluster_id=C20 | |coexpression_cluster_id=C20 | ||
|description=CAGE_peak_8_at_TRAPPC12_5end | |description=CAGE_peak_8_at_TRAPPC12_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0010226;5.06e-15;1!UBERON:0005062;2.26e-14;4!UBERON:0007284;2.26e-14;4!UBERON:0007123;1.58e-11;5!UBERON:0008814;7.52e-08;2!UBERON:0010056;7.52e-08;2!UBERON:0010122;7.52e-08;2 | |ontology_enrichment_development_v019=UBERON:0010226;5.06e-15;1!UBERON:0005062;2.26e-14;4!UBERON:0007284;2.26e-14;4!UBERON:0007123;1.58e-11;5!UBERON:0008814;7.52e-08;2!UBERON:0010056;7.52e-08;2!UBERON:0010122;7.52e-08;2 | ||
|ontology_enrichment_disease=DOID:114!3.51e-10!2 | |ontology_enrichment_disease=DOID:114!3.51e-10!2 | ||
|ontology_enrichment_disease_v019=DOID:114;4.41e-28;2!DOID:178;7.13e-15;1!DOID:326;7.13e-15;1!DOID:3978;7.13e-15;1!DOID:3394;7.13e-15;1!DOID:5844;7.13e-15;1!DOID:1287;1.46e-14;4 | |ontology_enrichment_disease_v019=DOID:114;4.41e-28;2!DOID:178;7.13e-15;1!DOID:326;7.13e-15;1!DOID:3978;7.13e-15;1!DOID:3394;7.13e-15;1!DOID:5844;7.13e-15;1!DOID:1287;1.46e-14;4 | ||
|ontology_enrichment_disease_v019_2=DOID:114,4.13e-28,2;DOID:178,7.13e-15,1;DOID:326,7.13e-15,1;DOID:3978,7.13e-15,1;DOID:3394,7.13e-15,1;DOID:5844,7.13e-15,1;DOID:1287,1.41e-14,4 | |||
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|ontology_enrichment_uberon_v019=UBERON:0007100;3.61e-19;25!UBERON:0003978;7.94e-19;3!UBERON:0000946;7.94e-19;3!UBERON:0001723;2.31e-18;3!UBERON:0001033;2.31e-18;3!UBERON:0002084;5.06e-15;1!UBERON:0002082;5.06e-15;1!UBERON:0002146;8.17e-15;1!UBERON:0005623;8.17e-15;1!UBERON:0002135;1.07e-14;1!UBERON:0002046;1.58e-11;5!UBERON:0002133;5.37e-08;2!UBERON:0003127;7.52e-08;2!UBERON:0001873;7.52e-08;2!UBERON:0000473;1.82e-07;8 | |ontology_enrichment_uberon_v019=UBERON:0007100;3.61e-19;25!UBERON:0003978;7.94e-19;3!UBERON:0000946;7.94e-19;3!UBERON:0001723;2.31e-18;3!UBERON:0001033;2.31e-18;3!UBERON:0002084;5.06e-15;1!UBERON:0002082;5.06e-15;1!UBERON:0002146;8.17e-15;1!UBERON:0005623;8.17e-15;1!UBERON:0002135;1.07e-14;1!UBERON:0002046;1.58e-11;5!UBERON:0002133;5.37e-08;2!UBERON:0003127;7.52e-08;2!UBERON:0001873;7.52e-08;2!UBERON:0000473;1.82e-07;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003978,7.94e-19,3;UBERON:0009751,7.94e-19,3;UBERON:0000946,7.94e-19,3;UBERON:0002523,7.94e-19,3;UBERON:0005983,7.94e-19,3;UBERON:0002165,7.94e-19,3;UBERON:0002062,7.94e-19,3;UBERON:0007280,7.94e-19,3;UBERON:0001723,2.53e-18,3;UBERON:0001033,2.53e-18,3;UBERON:0010056,2.53e-18,3;UBERON:0007100,9.87e-18,27;UBERON:0007023,2.01e-15,114;UBERON:0002084,5.42e-15,1;UBERON:0002082,5.42e-15,1;UBERON:0010226,5.42e-15,1;UBERON:0003103,6.08e-15,68;UBERON:0002146,8.17e-15,1;UBERON:0005623,8.17e-15,1;UBERON:0002135,1.07e-14,1;UBERON:0008814,6.65e-12,18;UBERON:0002046,1.85e-11,5;UBERON:0004117,1.85e-11,5;UBERON:0007689,1.85e-11,5;UBERON:0007123,1.85e-11,5;UBERON:0003091,1.85e-11,5;UBERON:0004797,1.32e-08,7;UBERON:0002133,5.37e-08,2;UBERON:0001873,6.15e-08,2;UBERON:0010122,6.15e-08,2;UBERON:0003127,8.04e-08,2;UBERON:0000473,1.76e-07,8 | |||
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| ||
|short_description=p8@TRAPPC12 | |short_description=p8@TRAPPC12 | ||
}} | }} |
Latest revision as of 00:27, 17 September 2015
Short description: | p8@TRAPPC12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_TRAPPC12_5end |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | -16bp_to_ENST00000461577_5end |
EntrezGene: | TRAPPC12 |
HGNC: | 24284 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
valve | 7.94e-19 | 3 |
cardiac mesenchyme | 7.94e-19 | 3 |
cardial valve | 7.94e-19 | 3 |
tunica intima | 7.94e-19 | 3 |
heart layer | 7.94e-19 | 3 |
endocardium | 7.94e-19 | 3 |
endocardial cushion | 7.94e-19 | 3 |
presumptive endocardium | 7.94e-19 | 3 |
tongue | 2.53e-18 | 3 |
gustatory system | 2.53e-18 | 3 |
future tongue | 2.53e-18 | 3 |
primary circulatory organ | 9.87e-18 | 27 |
adult organism | 2.01e-15 | 114 |
heart left ventricle | 5.42e-15 | 1 |
cardiac ventricle | 5.42e-15 | 1 |
future cardiac ventricle | 5.42e-15 | 1 |
compound organ | 6.08e-15 | 68 |
pulmonary valve | 8.17e-15 | 1 |
semi-lunar valve | 8.17e-15 | 1 |
mitral valve | 1.07e-14 | 1 |
pharyngeal arch system | 6.65e-12 | 18 |
thyroid gland | 1.85e-11 | 5 |
pharyngeal pouch | 1.85e-11 | 5 |
thyroid diverticulum | 1.85e-11 | 5 |
pharyngeal pouch 2 | 1.85e-11 | 5 |
thyroid primordium | 1.85e-11 | 5 |
blood vessel layer | 1.32e-08 | 7 |
atrioventricular valve | 5.37e-08 | 2 |
caudate nucleus | 6.15e-08 | 2 |
future caudate nucleus | 6.15e-08 | 2 |
open tracheal system trachea | 8.04e-08 | 2 |
testis | 1.76e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
heart disease | 4.13e-28 | 2 |
vascular disease | 7.13e-15 | 1 |
ischemia | 7.13e-15 | 1 |
extrinsic cardiomyopathy | 7.13e-15 | 1 |
myocardial ischemia | 7.13e-15 | 1 |
myocardial infarction | 7.13e-15 | 1 |
cardiovascular system disease | 1.41e-14 | 4 |