FFCP PHASE1:Hg19::chr2:16081783..16081817,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10408 | |EntrezGene=10408 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=16911 | |HGNC=16911 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=27bp_to_ENST00000419083,NR_026766,uc002rch.1_5end | |association_with_transcript=27bp_to_ENST00000419083,NR_026766,uc002rch.1_5end | ||
|cluster_id=chr2:16081783..16081817,- | |||
|coexpression_cluster_id=C135 | |coexpression_cluster_id=C135 | ||
|description=CAGE_peak_1_at_MYCNOS_5end | |description=CAGE_peak_1_at_MYCNOS_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000039!5.00e-20!7;CL:0000586!5.00e-20!7;CL:0002322!1.09e-14!5;CL:0000540!4.11e-12!6;CL:0000031!4.11e-12!6;CL:0000404!4.11e-12!6;CL:0000047!5.58e-09!8 | |ontology_enrichment_celltype=CL:0000039!5.00e-20!7;CL:0000586!5.00e-20!7;CL:0002322!1.09e-14!5;CL:0000540!4.11e-12!6;CL:0000031!4.11e-12!6;CL:0000404!4.11e-12!6;CL:0000047!5.58e-09!8 | ||
|ontology_enrichment_celltype_v019=CL:0000333;1.35e-23;5!CL:0000039;1.59e-16;7!CL:0000586;1.59e-16;7!CL:0002321;8.96e-14;15!CL:0000037;1.25e-13;1!CL:0001024;1.25e-13;1 | |ontology_enrichment_celltype_v019=CL:0000333;1.35e-23;5!CL:0000039;1.59e-16;7!CL:0000586;1.59e-16;7!CL:0002321;8.96e-14;15!CL:0000037;1.25e-13;1!CL:0001024;1.25e-13;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.43e-16,7;CL:0000586,1.43e-16,7;CL:0001024,9.73e-14,1;CL:0000333,2.49e-07,41;CL:0000133,3.83e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;9.41e-12;10!UBERON:0005564;9.41e-12;10 | |ontology_enrichment_development_v019=UBERON:0009117;9.41e-12;10!UBERON:0005564;9.41e-12;10 | ||
|ontology_enrichment_disease=DOID:3095!4.15e-20!22;DOID:2994!4.15e-20!22 | |ontology_enrichment_disease=DOID:3095!4.15e-20!22;DOID:2994!4.15e-20!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;2.88e-27;22!DOID:2994;2.88e-27;22!DOID:169;8.83e-20;6!DOID:171;4.07e-12;10 | |ontology_enrichment_disease_v019=DOID:3095;2.88e-27;22!DOID:2994;2.88e-27;22!DOID:169;8.83e-20;6!DOID:171;4.07e-12;10 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,2.61e-27,22;DOID:2994,2.61e-27,22;DOID:169,8.56e-20,6;DOID:171,4.00e-12,10;DOID:0050687,1.68e-07,143 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000013;1.35e-23;5!UBERON:0002410;1.35e-23;5!UBERON:0000473;1.54e-14;8!UBERON:0000010;2.13e-13;8!UBERON:0003135;9.76e-11;11 | |ontology_enrichment_uberon_v019=UBERON:0000013;1.35e-23;5!UBERON:0002410;1.35e-23;5!UBERON:0000473;1.54e-14;8!UBERON:0000010;2.13e-13;8!UBERON:0003135;9.76e-11;11 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,1.30e-23,5;UBERON:0002410,1.30e-23,5;UBERON:0000473,1.40e-14,8;UBERON:0000010,2.09e-13,8;UBERON:0003135,9.13e-11,11 | |||
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| ||
|short_description=p1@MYCNOS | |short_description=p1@MYCNOS | ||
}} | }} |
Latest revision as of 19:23, 17 September 2015
Short description: | p1@MYCNOS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MYCNOS_5end |
Coexpression cluster: | C135_neuroblastoma_retinoblastoma_carcinoid_choriocarcinoma_testicular_acute_rectum |
Association with transcript: | 27bp_to_ENST00000419083, NR_026766, uc002rch.1_5end |
EntrezGene: | MYCNOS |
HGNC: | 16911 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.43e-16 | 7 |
germ cell | 1.43e-16 | 7 |
CD34-positive, CD38-negative hematopoietic stem cell | 9.73e-14 | 1 |
migratory neural crest cell | 2.49e-07 | 41 |
neurectodermal cell | 3.83e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 1.30e-23 | 5 |
autonomic nervous system | 1.30e-23 | 5 |
testis | 1.40e-14 | 8 |
peripheral nervous system | 2.09e-13 | 8 |
male reproductive organ | 9.13e-11 | 11 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.61e-27 | 22 |
germ cell cancer | 2.61e-27 | 22 |
neuroendocrine tumor | 8.56e-20 | 6 |
neuroectodermal tumor | 4.00e-12 | 10 |
cell type cancer | 1.68e-07 | 143 |