FFCP PHASE1:Hg19::chr3:147124547..147124563,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84107 | |EntrezGene=84107 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20393 | |HGNC=20393 | ||
|TSSclassifier=strong | |||
|UniProt=C9J7D5 | |UniProt=C9J7D5 | ||
|association_with_transcript=13bp_to_ENST00000491672_5end | |association_with_transcript=13bp_to_ENST00000491672_5end | ||
|cluster_id=chr3:147124547..147124563,- | |||
|coexpression_cluster_id=C11 | |coexpression_cluster_id=C11 | ||
|description=CAGE_peak_6_at_ZIC4_5end | |description=CAGE_peak_6_at_ZIC4_5end | ||
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|ontology_enrichment_celltype=CL:0000708!4.06e-11!3;CL:0002603!4.64e-11!3;CL:0002575!2.51e-08!2;CL:0002549!4.67e-08!2 | |ontology_enrichment_celltype=CL:0000708!4.06e-11!3;CL:0002603!4.64e-11!3;CL:0002575!2.51e-08!2;CL:0002549!4.67e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0002575;8.12e-28;2!CL:0002549;4.08e-27;2!CL:0000708;1.94e-18;3!CL:0000669;1.97e-14;4!CL:0000327;1.82e-08;15 | |ontology_enrichment_celltype_v019=CL:0002575;8.12e-28;2!CL:0002549;4.08e-27;2!CL:0000708;1.94e-18;3!CL:0000669;1.97e-14;4!CL:0000327;1.82e-08;15 | ||
|ontology_enrichment_celltype_v019_2=CL:0002575,8.13e-28,2;CL:0002549,9.09e-27,2;CL:0000708,1.62e-18,3;CL:0000669,1.97e-14,4;CL:0000327,1.56e-08,15 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.56e-41;3 | |ontology_enrichment_development_v019=UBERON:0006215;2.56e-41;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0002037,3.58e-36,6;UBERON:0006215,3.58e-36,6;UBERON:0004733,8.20e-28,12;UBERON:0002028,8.20e-28,12;UBERON:0007277,8.20e-28,12;UBERON:0005629,9.09e-27,2;UBERON:0005358,9.09e-27,2;UBERON:0001886,9.09e-27,2;UBERON:0004086,9.09e-27,2;UBERON:0005282,9.09e-27,2;UBERON:0005281,9.09e-27,2;UBERON:0004732,1.11e-25,13;UBERON:0002680,2.92e-24,9;UBERON:0001895,2.92e-24,9;UBERON:0010092,2.92e-24,9;UBERON:0005284,4.67e-24,5;UBERON:0003076,2.85e-22,15;UBERON:0003057,2.85e-22,15;UBERON:0006876,2.14e-19,11;UBERON:0003210,1.62e-18,3;UBERON:0000955,2.30e-11,68;UBERON:0006238,2.30e-11,68;UBERON:0001017,1.84e-09,81;UBERON:0001016,1.86e-08,89;UBERON:0003075,2.51e-07,82;UBERON:0007284,2.51e-07,82;UBERON:0002346,5.81e-07,86 | |||
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| ||
|short_description=p6@ZIC4 | |short_description=p6@ZIC4 | ||
}} | }} |
Latest revision as of 18:42, 15 September 2015
Short description: | p6@ZIC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_ZIC4_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 13bp_to_ENST00000491672_5end |
EntrezGene: | ZIC4 |
HGNC: | 20393 |
UniProt: | C9J7D5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system pericyte | 8.13e-28 | 2 |
fibroblast of choroid plexus | 9.09e-27 | 2 |
leptomeningeal cell | 1.62e-18 | 3 |
pericyte cell | 1.97e-14 | 4 |
extracellular matrix secreting cell | 1.56e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 3.58e-36 | 6 |
rhombic lip | 3.58e-36 | 6 |
segmental subdivision of hindbrain | 8.20e-28 | 12 |
hindbrain | 8.20e-28 | 12 |
presumptive hindbrain | 8.20e-28 | 12 |
vascular plexus | 9.09e-27 | 2 |
ventricle of nervous system | 9.09e-27 | 2 |
choroid plexus | 9.09e-27 | 2 |
brain ventricle | 9.09e-27 | 2 |
ventricular system of brain | 9.09e-27 | 2 |
ventricular system of central nervous system | 9.09e-27 | 2 |
segmental subdivision of nervous system | 1.11e-25 | 13 |
regional part of metencephalon | 2.92e-24 | 9 |
metencephalon | 2.92e-24 | 9 |
future metencephalon | 2.92e-24 | 9 |
brain vasculature | 4.67e-24 | 5 |
posterior neural tube | 2.85e-22 | 15 |
chordal neural plate | 2.85e-22 | 15 |
vasculature of organ | 2.14e-19 | 11 |
blood-cerebrospinal fluid barrier | 1.62e-18 | 3 |
brain | 2.30e-11 | 68 |
future brain | 2.30e-11 | 68 |
central nervous system | 1.84e-09 | 81 |
nervous system | 1.86e-08 | 89 |
neural plate | 2.51e-07 | 82 |
presumptive neural plate | 2.51e-07 | 82 |
neurectoderm | 5.81e-07 | 86 |