FFCP PHASE1:Hg19::chr19:18896512..18896527,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:18896512..18896527,- | |||
|coexpression_cluster_id=C240 | |coexpression_cluster_id=C240 | ||
|description=CAGE_peak_at_chr19:18896512..18896527,- | |description=CAGE_peak_at_chr19:18896512..18896527,- | ||
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|ontology_enrichment_celltype_v019=CL:0002334;1.74e-39;12!CL:0002580;7.01e-31;3!CL:0002615;1.58e-30;3!CL:0000135;2.36e-30;3!CL:0000388;2.36e-30;3!CL:0002579;2.01e-29;3!CL:0000136;1.28e-27;13!CL:0002617;1.25e-21;2!CL:0000153;4.38e-18;9!CL:0000447;4.38e-18;9!CL:0000499;8.57e-17;28!CL:0000138;1.20e-15;6!CL:0002616;1.45e-11;1!CL:0002581;2.68e-11;1!CL:0000327;6.01e-11;15 | |ontology_enrichment_celltype_v019=CL:0002334;1.74e-39;12!CL:0002580;7.01e-31;3!CL:0002615;1.58e-30;3!CL:0000135;2.36e-30;3!CL:0000388;2.36e-30;3!CL:0002579;2.01e-29;3!CL:0000136;1.28e-27;13!CL:0002617;1.25e-21;2!CL:0000153;4.38e-18;9!CL:0000447;4.38e-18;9!CL:0000499;8.57e-17;28!CL:0000138;1.20e-15;6!CL:0002616;1.45e-11;1!CL:0002581;2.68e-11;1!CL:0000327;6.01e-11;15 | ||
|ontology_enrichment_celltype_v019_2=CL:0002334,1.79e-39,12;CL:0002580,7.37e-31,3;CL:0002615,1.83e-30,3;CL:0000135,2.48e-30,3;CL:0000388,2.48e-30,3;CL:0002579,2.02e-29,3;CL:0000136,6.88e-24,15;CL:0002617,1.25e-21,2;CL:0000153,4.10e-18,9;CL:0000447,4.10e-18,9;CL:0000499,8.36e-17,28;CL:0000058,1.12e-15,6;CL:0000138,1.12e-15,6;CL:0002616,1.31e-11,1;CL:0000057,1.40e-11,76;CL:0002581,2.68e-11,1;CL:0000327,5.78e-11,15;CL:0000134,1.48e-08,354;CL:0002320,2.47e-08,361;CL:0000219,1.49e-07,386 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!5.04e-30!6;UBERON:0002358!5.04e-30!6;UBERON:0003684!5.04e-30!6;UBERON:0001178!5.04e-30!6;UBERON:0004457!9.13e-26!12;UBERON:0000042!9.13e-26!12;UBERON:0000043!4.23e-16!3;UBERON:0000310!5.04e-13!10;UBERON:0001443!8.21e-12!11;UBERON:0005406!1.81e-11!2;UBERON:0004923!4.32e-10!57;UBERON:0002384!4.16e-09!375;UBERON:0006915!1.35e-07!3;UBERON:0002018!1.35e-07!3;UBERON:0002217!1.35e-07!3;UBERON:0007616!1.35e-07!3 | |ontology_enrichment_uberon=UBERON:0003688!5.04e-30!6;UBERON:0002358!5.04e-30!6;UBERON:0003684!5.04e-30!6;UBERON:0001178!5.04e-30!6;UBERON:0004457!9.13e-26!12;UBERON:0000042!9.13e-26!12;UBERON:0000043!4.23e-16!3;UBERON:0000310!5.04e-13!10;UBERON:0001443!8.21e-12!11;UBERON:0005406!1.81e-11!2;UBERON:0004923!4.32e-10!57;UBERON:0002384!4.16e-09!375;UBERON:0006915!1.35e-07!3;UBERON:0002018!1.35e-07!3;UBERON:0002217!1.35e-07!3;UBERON:0007616!1.35e-07!3 | ||
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|ontology_enrichment_uberon_v019_2=UBERON:0003688,4.66e-58,6;UBERON:0002358,4.66e-58,6;UBERON:0003684,4.66e-58,6;UBERON:0001178,4.66e-58,6;UBERON:0004457,2.54e-39,12;UBERON:0000042,2.54e-39,12;UBERON:0007846,2.48e-30,3;UBERON:0000043,2.48e-30,3;UBERON:0007845,2.48e-30,3;UBERON:0000310,2.33e-25,10;UBERON:0001443,4.71e-23,11;UBERON:0005406,3.84e-21,2;UBERON:0004458,3.67e-09,49;UBERON:0009569,4.00e-09,112;UBERON:0002384,4.95e-08,371;UBERON:0002323,2.82e-07,46 | |||
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|short_description=p@chr19:18896512..18896527,- | |short_description=p@chr19:18896512..18896527,- | ||
}} | }} |
Latest revision as of 05:20, 26 July 2015
Short description: | p@chr19:18896512..18896527, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:18896512..18896527, - |
Coexpression cluster: | C240_Adipocyte_Preadipocyte_Osteoblast_Chondrocyte_tenocyte_Synoviocyte_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 1.79e-39 | 12 |
preadipocyte of the breast | 7.37e-31 | 3 |
adipocyte of omentum tissue | 1.83e-30 | 3 |
fibrocyte | 2.48e-30 | 3 |
tendon cell | 2.48e-30 | 3 |
omentum preadipocyte | 2.02e-29 | 3 |
fat cell | 6.88e-24 | 15 |
adipocyte of breast | 1.25e-21 | 2 |
GAG secreting cell | 4.10e-18 | 9 |
carbohydrate secreting cell | 4.10e-18 | 9 |
stromal cell | 8.36e-17 | 28 |
chondroblast | 1.12e-15 | 6 |
chondrocyte | 1.12e-15 | 6 |
perirenal adipocyte cell | 1.31e-11 | 1 |
fibroblast | 1.40e-11 | 76 |
perirenal preadipocyte | 2.68e-11 | 1 |
extracellular matrix secreting cell | 5.78e-11 | 15 |
mesenchymal cell | 1.48e-08 | 354 |
connective tissue cell | 2.47e-08 | 361 |
motile cell | 1.49e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
omentum | 4.66e-58 | 6 |
peritoneum | 4.66e-58 | 6 |
abdominal cavity | 4.66e-58 | 6 |
visceral peritoneum | 4.66e-58 | 6 |
cavity lining | 2.54e-39 | 12 |
serous membrane | 2.54e-39 | 12 |
dense regular connective tissue | 2.48e-30 | 3 |
tendon | 2.48e-30 | 3 |
regular connective tissue | 2.48e-30 | 3 |
breast | 2.33e-25 | 10 |
chest | 4.71e-23 | 11 |
perirenal fat | 3.84e-21 | 2 |
body cavity or lining | 3.67e-09 | 49 |
subdivision of trunk | 4.00e-09 | 112 |
connective tissue | 4.95e-08 | 371 |
body cavity | 2.82e-07 | 46 |