FFCP PHASE1:Hg19::chr6:25279587..25279648,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55604 | |EntrezGene=55604 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21581 | |HGNC=21581 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc010jpx.2,uc010jpy.2,uc011djw.1_5end | |association_with_transcript=0bp_to_uc010jpx.2,uc010jpy.2,uc011djw.1_5end | ||
|cluster_id=chr6:25279587..25279648,+ | |||
|description=CAGE_peak_1_at_LRRC16A_5end | |description=CAGE_peak_1_at_LRRC16A_5end | ||
|id=chr6:25279587..25279648,+ | |id=chr6:25279587..25279648,+ | ||
|ontology_enrichment_celltype=CL:0000066!3.04e-07!254 | |ontology_enrichment_celltype=CL:0000066!3.04e-07!254 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.69e-07,253 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:305!8.67e-14!106;DOID:0050687!7.09e-12!143;DOID:299!3.48e-07!25 | |ontology_enrichment_disease=DOID:305!8.67e-14!106;DOID:0050687!7.09e-12!143;DOID:299!3.48e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:299;6.90e-07;25 | |ontology_enrichment_disease_v019=DOID:299;6.90e-07;25 | ||
|ontology_enrichment_disease_v019_2=DOID:305,1.10e-13,106;DOID:0050687,9.66e-12,143;DOID:299,3.29e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0000064!5.58e-13!219;UBERON:0007023!9.61e-11!115;UBERON:0001017!2.78e-09!82;UBERON:0000481!4.66e-09!347;UBERON:0000062!4.80e-09!511;UBERON:0005743!7.47e-09!86;UBERON:0004119!1.02e-08!169;UBERON:0000925!1.02e-08!169;UBERON:0006595!1.02e-08!169;UBERON:0001007!1.14e-08!155;UBERON:0001555!1.14e-08!155;UBERON:0007026!1.14e-08!155;UBERON:0001049!6.89e-08!57;UBERON:0005068!6.89e-08!57;UBERON:0006241!6.89e-08!57;UBERON:0007135!6.89e-08!57;UBERON:0000955!1.75e-07!69;UBERON:0006238!1.75e-07!69;UBERON:0005156!3.79e-07!59;UBERON:0000990!3.79e-07!59;UBERON:0002780!3.98e-07!41;UBERON:0001890!3.98e-07!41;UBERON:0006240!3.98e-07!41;UBERON:0003080!5.46e-07!42;UBERON:0002616!5.78e-07!59;UBERON:0004121!6.06e-07!169;UBERON:0001869!6.19e-07!32;UBERON:0003075!6.40e-07!86;UBERON:0007284!6.40e-07!86;UBERON:0000477!9.97e-07!286 | |ontology_enrichment_uberon=UBERON:0000064!5.58e-13!219;UBERON:0007023!9.61e-11!115;UBERON:0001017!2.78e-09!82;UBERON:0000481!4.66e-09!347;UBERON:0000062!4.80e-09!511;UBERON:0005743!7.47e-09!86;UBERON:0004119!1.02e-08!169;UBERON:0000925!1.02e-08!169;UBERON:0006595!1.02e-08!169;UBERON:0001007!1.14e-08!155;UBERON:0001555!1.14e-08!155;UBERON:0007026!1.14e-08!155;UBERON:0001049!6.89e-08!57;UBERON:0005068!6.89e-08!57;UBERON:0006241!6.89e-08!57;UBERON:0007135!6.89e-08!57;UBERON:0000955!1.75e-07!69;UBERON:0006238!1.75e-07!69;UBERON:0005156!3.79e-07!59;UBERON:0000990!3.79e-07!59;UBERON:0002780!3.98e-07!41;UBERON:0001890!3.98e-07!41;UBERON:0006240!3.98e-07!41;UBERON:0003080!5.46e-07!42;UBERON:0002616!5.78e-07!59;UBERON:0004121!6.06e-07!169;UBERON:0001869!6.19e-07!32;UBERON:0003075!6.40e-07!86;UBERON:0007284!6.40e-07!86;UBERON:0000477!9.97e-07!286 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,4.49e-12,223;UBERON:0007023,2.20e-10,114;UBERON:0001007,4.60e-10,145;UBERON:0001555,4.60e-10,145;UBERON:0007026,4.60e-10,145;UBERON:0004119,1.19e-09,160;UBERON:0000925,1.19e-09,160;UBERON:0006595,1.19e-09,160;UBERON:0001017,2.06e-09,81;UBERON:0001049,4.94e-08,56;UBERON:0005068,4.94e-08,56;UBERON:0006241,4.94e-08,56;UBERON:0007135,4.94e-08,56;UBERON:0000073,1.09e-07,53;UBERON:0002616,1.09e-07,53;UBERON:0000955,1.34e-07,68;UBERON:0006238,1.34e-07,68;UBERON:0004921,1.55e-07,118;UBERON:0002780,3.77e-07,41;UBERON:0001890,3.77e-07,41;UBERON:0003080,3.77e-07,41;UBERON:0006240,3.77e-07,41;UBERON:0005156,4.41e-07,59;UBERON:0000990,4.41e-07,59;UBERON:0001869,5.87e-07,32 | |||
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| ||
|short_description=p1@LRRC16A | |short_description=p1@LRRC16A | ||
}} | }} |
Latest revision as of 07:38, 17 September 2015
Short description: | p1@LRRC16A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRRC16A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc010jpx.2, uc010jpy.2, uc011djw.1_5end |
EntrezGene: | LRRC16A |
HGNC: | 21581 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.69e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 4.49e-12 | 223 |
adult organism | 2.20e-10 | 114 |
digestive system | 4.60e-10 | 145 |
digestive tract | 4.60e-10 | 145 |
primitive gut | 4.60e-10 | 145 |
endoderm-derived structure | 1.19e-09 | 160 |
endoderm | 1.19e-09 | 160 |
presumptive endoderm | 1.19e-09 | 160 |
central nervous system | 2.06e-09 | 81 |
neural tube | 4.94e-08 | 56 |
neural rod | 4.94e-08 | 56 |
future spinal cord | 4.94e-08 | 56 |
neural keel | 4.94e-08 | 56 |
regional part of nervous system | 1.09e-07 | 53 |
regional part of brain | 1.09e-07 | 53 |
brain | 1.34e-07 | 68 |
future brain | 1.34e-07 | 68 |
subdivision of digestive tract | 1.55e-07 | 118 |
regional part of forebrain | 3.77e-07 | 41 |
forebrain | 3.77e-07 | 41 |
anterior neural tube | 3.77e-07 | 41 |
future forebrain | 3.77e-07 | 41 |
reproductive structure | 4.41e-07 | 59 |
reproductive system | 4.41e-07 | 59 |
cerebral hemisphere | 5.87e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.10e-13 | 106 |
cell type cancer | 9.66e-12 | 143 |
adenocarcinoma | 3.29e-07 | 25 |