FFCP PHASE1:Hg19::chr1:214454271..214454293,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56950 | |EntrezGene=56950 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20982 | |HGNC=20982 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-151bp_to_ENST00000491455_5end | |association_with_transcript=-151bp_to_ENST00000491455_5end | ||
|cluster_id=chr1:214454271..214454293,+ | |||
|description=CAGE_peak_3_at_SMYD2_5end | |description=CAGE_peak_3_at_SMYD2_5end | ||
|id=chr1:214454271..214454293,+ | |id=chr1:214454271..214454293,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001950!7.32e-10!20;UBERON:0007023!9.49e-10!115;UBERON:0002619!4.48e-09!22;UBERON:0001049!1.06e-08!57;UBERON:0005068!1.06e-08!57;UBERON:0006241!1.06e-08!57;UBERON:0007135!1.06e-08!57;UBERON:0000956!1.86e-07!25;UBERON:0000203!1.86e-07!25;UBERON:0002616!2.16e-07!59;UBERON:0001869!2.53e-07!32;UBERON:0002780!5.87e-07!41;UBERON:0001890!5.87e-07!41;UBERON:0006240!5.87e-07!41;UBERON:0003080!6.41e-07!42;UBERON:0002020!8.08e-07!34;UBERON:0003528!8.08e-07!34 | |ontology_enrichment_uberon=UBERON:0001950!7.32e-10!20;UBERON:0007023!9.49e-10!115;UBERON:0002619!4.48e-09!22;UBERON:0001049!1.06e-08!57;UBERON:0005068!1.06e-08!57;UBERON:0006241!1.06e-08!57;UBERON:0007135!1.06e-08!57;UBERON:0000956!1.86e-07!25;UBERON:0000203!1.86e-07!25;UBERON:0002616!2.16e-07!59;UBERON:0001869!2.53e-07!32;UBERON:0002780!5.87e-07!41;UBERON:0001890!5.87e-07!41;UBERON:0006240!5.87e-07!41;UBERON:0003080!6.41e-07!42;UBERON:0002020!8.08e-07!34;UBERON:0003528!8.08e-07!34 | ||
|ontology_enrichment_uberon_v019=UBERON:0001950;3.55e-14;20!UBERON:0002619;1.21e-13;22!UBERON:0000956;3.26e-11;25!UBERON:0000203;3.26e-11;25!UBERON:0001869;1.80e-09;32!UBERON:0003528;6.95e-09;34!UBERON:0002020;6.95e-09;34!UBERON:0001893;1.59e-08;34!UBERON:0002791;3.58e-08;32!UBERON:0000073;5.19e-07;53!UBERON:0002616;5.19e-07;53 | |ontology_enrichment_uberon_v019=UBERON:0001950;3.55e-14;20!UBERON:0002619;1.21e-13;22!UBERON:0000956;3.26e-11;25!UBERON:0000203;3.26e-11;25!UBERON:0001869;1.80e-09;32!UBERON:0003528;6.95e-09;34!UBERON:0002020;6.95e-09;34!UBERON:0001893;1.59e-08;34!UBERON:0002791;3.58e-08;32!UBERON:0000073;5.19e-07;53!UBERON:0002616;5.19e-07;53 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,2.81e-14,20;UBERON:0002619,7.52e-14,22;UBERON:0000073,4.94e-12,53;UBERON:0002616,4.94e-12,53;UBERON:0001049,1.03e-11,56;UBERON:0005068,1.03e-11,56;UBERON:0006241,1.03e-11,56;UBERON:0007135,1.03e-11,56;UBERON:0000956,2.15e-11,25;UBERON:0000203,2.15e-11,25;UBERON:0001869,7.27e-11,32;UBERON:0003528,1.32e-10,34;UBERON:0002020,1.32e-10,34;UBERON:0007023,7.83e-10,114;UBERON:0001893,8.73e-10,34;UBERON:0002780,1.58e-09,41;UBERON:0001890,1.58e-09,41;UBERON:0003080,1.58e-09,41;UBERON:0006240,1.58e-09,41;UBERON:0002791,1.60e-09,32;UBERON:0000955,4.87e-09,68;UBERON:0006238,4.87e-09,68;UBERON:0000025,5.73e-08,192;UBERON:0001017,9.94e-08,81;UBERON:0005631,1.98e-07,14;UBERON:0000158,1.98e-07,14;UBERON:0003075,2.63e-07,82;UBERON:0007284,2.63e-07,82;UBERON:0004111,3.10e-07,240;UBERON:0002346,4.39e-07,86;UBERON:0000200,4.54e-07,6;UBERON:0001016,9.44e-07,89;UBERON:0010371,9.92e-07,104 | |||
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| ||
|short_description=p3@SMYD2 | |short_description=p3@SMYD2 | ||
}} | }} |
Latest revision as of 01:43, 25 September 2015
Short description: | p3@SMYD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SMYD2_5end |
Coexpression cluster: | NA |
Association with transcript: | -151bp_to_ENST00000491455_5end |
EntrezGene: | SMYD2 |
HGNC: | 20982 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 2.81e-14 | 20 |
regional part of cerebral cortex | 7.52e-14 | 22 |
regional part of nervous system | 4.94e-12 | 53 |
regional part of brain | 4.94e-12 | 53 |
neural tube | 1.03e-11 | 56 |
neural rod | 1.03e-11 | 56 |
future spinal cord | 1.03e-11 | 56 |
neural keel | 1.03e-11 | 56 |
cerebral cortex | 2.15e-11 | 25 |
pallium | 2.15e-11 | 25 |
cerebral hemisphere | 7.27e-11 | 32 |
brain grey matter | 1.32e-10 | 34 |
gray matter | 1.32e-10 | 34 |
adult organism | 7.83e-10 | 114 |
telencephalon | 8.73e-10 | 34 |
regional part of forebrain | 1.58e-09 | 41 |
forebrain | 1.58e-09 | 41 |
anterior neural tube | 1.58e-09 | 41 |
future forebrain | 1.58e-09 | 41 |
regional part of telencephalon | 1.60e-09 | 32 |
brain | 4.87e-09 | 68 |
future brain | 4.87e-09 | 68 |
tube | 5.73e-08 | 192 |
central nervous system | 9.94e-08 | 81 |
extraembryonic membrane | 1.98e-07 | 14 |
membranous layer | 1.98e-07 | 14 |
neural plate | 2.63e-07 | 82 |
presumptive neural plate | 2.63e-07 | 82 |
anatomical conduit | 3.10e-07 | 240 |
neurectoderm | 4.39e-07 | 86 |
gyrus | 4.54e-07 | 6 |
nervous system | 9.44e-07 | 89 |
ecto-epithelium | 9.92e-07 | 104 |