FFCP PHASE1:Hg19::chr18:3795225..3795230,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:3795225..3795230,+ | |||
|description=CAGE_peak_at_chr18:3795225..3795230,+ | |description=CAGE_peak_at_chr18:3795225..3795230,+ | ||
|id=chr18:3795225..3795230,+ | |id=chr18:3795225..3795230,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.01e-20!254;CL:0002368!3.44e-10!13;CL:0000076!4.49e-10!62;CL:0000220!6.23e-07!246;CL:0002321!9.19e-07!248;CL:0002076!9.53e-07!43 | |ontology_enrichment_celltype=CL:0000066!1.01e-20!254;CL:0002368!3.44e-10!13;CL:0000076!4.49e-10!62;CL:0000220!6.23e-07!246;CL:0002321!9.19e-07!248;CL:0002076!9.53e-07!43 | ||
|ontology_enrichment_celltype_v019=CL:0002097;1.63e-12;2!CL:0002368;2.85e-11;13!CL:0002202;1.06e-10;9!CL:0002632;1.06e-10;9!CL:0000307;4.98e-09;3!CL:0000174;1.23e-08;3!CL:0002328;1.23e-08;3!CL:1001319;1.85e-07;1!CL:1000600;1.85e-07;1 | |ontology_enrichment_celltype_v019=CL:0002097;1.63e-12;2!CL:0002368;2.85e-11;13!CL:0002202;1.06e-10;9!CL:0002632;1.06e-10;9!CL:0000307;4.98e-09;3!CL:0000174;1.23e-08;3!CL:0002328;1.23e-08;3!CL:1001319;1.85e-07;1!CL:1000600;1.85e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0002097,1.54e-12,2;CL:0002368,3.12e-11,13;CL:0002202,1.15e-10,9;CL:0002632,1.15e-10,9;CL:0000068,5.85e-09,3;CL:0000069,5.85e-09,3;CL:0000307,5.85e-09,3;CL:0000377,5.85e-09,3;CL:0000174,1.19e-08,3;CL:0002328,1.19e-08,3;CL:0000066,1.34e-07,253;CL:1001319,1.44e-07,1;CL:1000600,1.44e-07,1;CL:0000076,1.52e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000377;4.98e-09;3 | |ontology_enrichment_development_v019=CL:0000377;4.98e-09;3 | ||
|ontology_enrichment_disease=DOID:0050687!7.50e-24!143;DOID:162!2.37e-22!235;DOID:14566!4.28e-22!239;DOID:305!1.69e-21!106;DOID:1749!9.59e-12!14;DOID:193!2.65e-07!29;DOID:120!5.36e-07!27 | |ontology_enrichment_disease=DOID:0050687!7.50e-24!143;DOID:162!2.37e-22!235;DOID:14566!4.28e-22!239;DOID:305!1.69e-21!106;DOID:1749!9.59e-12!14;DOID:193!2.65e-07!29;DOID:120!5.36e-07!27 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.12e-10;14!DOID:0060085;4.33e-07;1!DOID:3165;4.33e-07;1!DOID:0060121;4.33e-07;1!DOID:3111;4.33e-07;1!DOID:2438;4.33e-07;1!DOID:4418;4.33e-07;1!DOID:3603;4.33e-07;1 | |ontology_enrichment_disease_v019=DOID:1749;1.12e-10;14!DOID:0060085;4.33e-07;1!DOID:3165;4.33e-07;1!DOID:0060121;4.33e-07;1!DOID:3111;4.33e-07;1!DOID:2438;4.33e-07;1!DOID:4418;4.33e-07;1!DOID:3603;4.33e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,1.28e-10,14;DOID:0050687,1.75e-08,143;DOID:305,3.31e-08,106;DOID:162,1.23e-07,235;DOID:14566,2.19e-07,239;DOID:0060085,2.84e-07,1;DOID:3165,2.84e-07,1;DOID:0060121,2.84e-07,1;DOID:2438,2.84e-07,1;DOID:4418,2.84e-07,1;DOID:3111,4.34e-07,1;DOID:3603,4.34e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000065!2.49e-08!53;UBERON:0008947!4.73e-07!38;UBERON:0003258!4.73e-07!38 | |ontology_enrichment_uberon=UBERON:0000065!2.49e-08!53;UBERON:0008947!4.73e-07!38;UBERON:0003258!4.73e-07!38 | ||
|ontology_enrichment_uberon_v019=UBERON:0002369;1.23e-08;3!UBERON:0001235;1.23e-08;3!UBERON:0004815;1.23e-08;3!UBERON:0006858;1.23e-08;3!UBERON:0002031;1.23e-08;3!UBERON:0004645;1.85e-07;1!UBERON:0001256;1.85e-07;1!UBERON:0001259;1.85e-07;1!UBERON:0001282;4.33e-07;1!UBERON:0009842;4.33e-07;1!UBERON:0003704;4.33e-07;1!UBERON:0001171;4.33e-07;1!UBERON:0001172;4.33e-07;1 | |ontology_enrichment_uberon_v019=UBERON:0002369;1.23e-08;3!UBERON:0001235;1.23e-08;3!UBERON:0004815;1.23e-08;3!UBERON:0006858;1.23e-08;3!UBERON:0002031;1.23e-08;3!UBERON:0004645;1.85e-07;1!UBERON:0001256;1.85e-07;1!UBERON:0001259;1.85e-07;1!UBERON:0001282;4.33e-07;1!UBERON:0009842;4.33e-07;1!UBERON:0003704;4.33e-07;1!UBERON:0001171;4.33e-07;1!UBERON:0001172;4.33e-07;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002369,1.19e-08,3;UBERON:0001235,1.19e-08,3;UBERON:0004815,1.19e-08,3;UBERON:0006858,1.19e-08,3;UBERON:0002031,1.19e-08,3;UBERON:0004645,1.44e-07,1;UBERON:0001256,1.44e-07,1;UBERON:0001259,1.44e-07,1;UBERON:0001282,4.08e-07,1;UBERON:0009842,4.08e-07,1;UBERON:0003704,4.08e-07,1;UBERON:0001171,4.08e-07,1;UBERON:0001172,4.08e-07,1 | |||
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| ||
|short_description=p@chr18:3795225..3795230,+ | |short_description=p@chr18:3795225..3795230,+ | ||
}} | }} |
Latest revision as of 00:49, 26 July 2015
Short description: | p@chr18:3795225..3795230, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:3795225..3795230, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cortical cell of adrenal gland | 1.54e-12 | 2 |
respiratory epithelial cell | 3.12e-11 | 13 |
epithelial cell of tracheobronchial tree | 1.15e-10 | 9 |
epithelial cell of lower respiratory tract | 1.15e-10 | 9 |
duct epithelial cell | 5.85e-09 | 3 |
branched duct epithelial cell | 5.85e-09 | 3 |
tracheal epithelial cell | 5.85e-09 | 3 |
tracheoblast | 5.85e-09 | 3 |
steroid hormone secreting cell | 1.19e-08 | 3 |
bronchial epithelial cell | 1.19e-08 | 3 |
epithelial cell | 1.34e-07 | 253 |
bladder cell | 1.44e-07 | 1 |
lower urinary tract cell | 1.44e-07 | 1 |
squamous epithelial cell | 1.52e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
adrenal gland | 1.19e-08 | 3 |
adrenal cortex | 1.19e-08 | 3 |
lower respiratory tract epithelium | 1.19e-08 | 3 |
adrenal/interrenal gland | 1.19e-08 | 3 |
epithelium of bronchus | 1.19e-08 | 3 |
urinary bladder urothelium | 1.44e-07 | 1 |
wall of urinary bladder | 1.44e-07 | 1 |
mucosa of urinary bladder | 1.44e-07 | 1 |
intralobular bile duct | 4.08e-07 | 1 |
acinus | 4.08e-07 | 1 |
intrahepatic bile duct | 4.08e-07 | 1 |
portal lobule | 4.08e-07 | 1 |
hepatic acinus | 4.08e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.28e-10 | 14 |
cell type cancer | 1.75e-08 | 143 |
carcinoma | 3.31e-08 | 106 |
cancer | 1.23e-07 | 235 |
disease of cellular proliferation | 2.19e-07 | 239 |
organ system benign neoplasm | 2.84e-07 | 1 |
skin benign neoplasm | 2.84e-07 | 1 |
integumentary system benign neoplasm | 2.84e-07 | 1 |
dermis tumor | 2.84e-07 | 1 |
cutaneous fibrous histiocytoma | 2.84e-07 | 1 |
cystadenocarcinoma | 4.34e-07 | 1 |
mucinous cystadenocarcinoma | 4.34e-07 | 1 |