FFCP PHASE1:Hg19::chr12:122430019..122430039,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:122430019..122430039,+ | |||
|coexpression_cluster_id=C2193 | |coexpression_cluster_id=C2193 | ||
|description=CAGE_peak_at_chr12:122430019..122430039,+ | |description=CAGE_peak_at_chr12:122430019..122430039,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000066!5.23e-14!254;CL:0002159!1.09e-13!13;CL:0002368!1.36e-12!13;CL:0002076!2.35e-09!43;CL:0002202!5.74e-09!9;CL:0002632!5.74e-09!9;CL:0000076!2.83e-08!62;CL:0002166!4.74e-08!3;CL:0000817!1.68e-07!3;CL:0000223!1.90e-07!59 | |ontology_enrichment_celltype=CL:0000066!5.23e-14!254;CL:0002159!1.09e-13!13;CL:0002368!1.36e-12!13;CL:0002076!2.35e-09!43;CL:0002202!5.74e-09!9;CL:0002632!5.74e-09!9;CL:0000076!2.83e-08!62;CL:0002166!4.74e-08!3;CL:0000817!1.68e-07!3;CL:0000223!1.90e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002159;6.25e-23;14!CL:0000317;1.56e-19;2!CL:1000448;1.56e-19;2!CL:0002308;1.56e-19;2!CL:0002140;1.56e-19;2!CL:0000362;1.37e-16;9!CL:0002166;7.86e-13;3!CL:0000946;3.00e-10;1!CL:0000785;3.00e-10;1!CL:0000819;3.00e-10;1!CL:0000786;3.00e-10;1!CL:0002077;8.66e-09;34!CL:0000622;2.32e-08;5!CL:0000312;3.04e-08;5!CL:0000154;4.19e-07;6!CL:0000240;5.25e-07;6!CL:0000311;5.25e-07;6!CL:0000079;5.25e-07;6!CL:0000237;5.25e-07;6 | |ontology_enrichment_celltype_v019=CL:0002159;6.25e-23;14!CL:0000317;1.56e-19;2!CL:1000448;1.56e-19;2!CL:0002308;1.56e-19;2!CL:0002140;1.56e-19;2!CL:0000362;1.37e-16;9!CL:0002166;7.86e-13;3!CL:0000946;3.00e-10;1!CL:0000785;3.00e-10;1!CL:0000819;3.00e-10;1!CL:0000786;3.00e-10;1!CL:0002077;8.66e-09;34!CL:0000622;2.32e-08;5!CL:0000312;3.04e-08;5!CL:0000154;4.19e-07;6!CL:0000240;5.25e-07;6!CL:0000311;5.25e-07;6!CL:0000079;5.25e-07;6!CL:0000237;5.25e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002159,7.45e-23,14;CL:0000317,1.36e-19,2;CL:1000448,1.36e-19,2;CL:0002308,1.36e-19,2;CL:0002140,1.36e-19,2;CL:0000785,8.59e-19,2;CL:0000955,8.59e-19,2;CL:0000818,8.59e-19,2;CL:0000954,8.59e-19,2;CL:0000816,8.59e-19,2;CL:0000362,1.71e-16,9;CL:0000817,7.40e-13,3;CL:0002166,7.40e-13,3;CL:0000946,2.74e-10,1;CL:0000786,2.74e-10,1;CL:0000980,2.74e-10,1;CL:0000819,3.01e-10,1;CL:0002077,3.59e-09,34;CL:0000622,2.19e-08,5;CL:0000312,3.92e-08,5;CL:0000154,4.00e-07,6;CL:0000240,6.48e-07,6;CL:0000311,6.48e-07,6;CL:0000079,6.48e-07,6;CL:0000237,6.48e-07,6;CL:0000036,6.48e-07,6;CL:0000357,6.48e-07,6;CL:0000114,6.48e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000954;9.39e-19;2!CL:0000357;5.25e-07;6!CL:0000114;5.25e-07;6 | |ontology_enrichment_development_v019=CL:0000954;9.39e-19;2!CL:0000357;5.25e-07;6!CL:0000114;5.25e-07;6 | ||
|ontology_enrichment_disease=DOID:1749!5.19e-12!14;DOID:305!6.12e-08!106 | |ontology_enrichment_disease=DOID:1749!5.19e-12!14;DOID:305!6.12e-08!106 | ||
|ontology_enrichment_disease_v019=DOID:0060058;4.58e-15;10!DOID:3151;3.00e-10;1!DOID:0060073;3.00e-10;1!DOID:8675;3.00e-10;1!DOID:3149;3.00e-10;1!DOID:3908;3.04e-08;5 | |ontology_enrichment_disease_v019=DOID:0060058;4.58e-15;10!DOID:3151;3.00e-10;1!DOID:0060073;3.00e-10;1!DOID:8675;3.00e-10;1!DOID:3149;3.00e-10;1!DOID:3908;3.04e-08;5 | ||
|ontology_enrichment_disease_v019_2=DOID:0060058,4.67e-15,10;DOID:0060073,3.01e-10,1;DOID:8675,3.01e-10,1;DOID:3151,3.61e-10,1;DOID:3149,3.61e-10,1;DOID:3908,2.54e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0003729!1.75e-07!5;UBERON:0000974!2.92e-07!10;UBERON:0007196!3.54e-07!14;UBERON:0001558!3.54e-07!14;UBERON:0001004!4.78e-07!72 | |ontology_enrichment_uberon=UBERON:0003729!1.75e-07!5;UBERON:0000974!2.92e-07!10;UBERON:0007196!3.54e-07!14;UBERON:0001558!3.54e-07!14;UBERON:0001004!4.78e-07!72 | ||
|ontology_enrichment_uberon_v019=UBERON:0002419;1.56e-19;2!UBERON:0007771;1.56e-19;2!UBERON:0003297;1.56e-19;2!UBERON:0001821;1.56e-19;2!UBERON:0003487;1.56e-19;2!UBERON:0001820;1.56e-19;2!UBERON:0001003;4.90e-10;15!UBERON:0007376;4.90e-10;15!UBERON:0001708;7.48e-10;4!UBERON:0008895;7.48e-10;4!UBERON:0011159;4.69e-08;5!UBERON:0010371;5.33e-07;31 | |ontology_enrichment_uberon_v019=UBERON:0002419;1.56e-19;2!UBERON:0007771;1.56e-19;2!UBERON:0003297;1.56e-19;2!UBERON:0001821;1.56e-19;2!UBERON:0003487;1.56e-19;2!UBERON:0001820;1.56e-19;2!UBERON:0001003;4.90e-10;15!UBERON:0007376;4.90e-10;15!UBERON:0001708;7.48e-10;4!UBERON:0008895;7.48e-10;4!UBERON:0011159;4.69e-08;5!UBERON:0010371;5.33e-07;31 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002419,1.36e-19,2;UBERON:0007771,1.36e-19,2;UBERON:0003297,1.36e-19,2;UBERON:0001821,1.36e-19,2;UBERON:0003487,1.36e-19,2;UBERON:0001820,1.36e-19,2;UBERON:0005089,1.36e-19,2;UBERON:0005088,1.36e-19,2;UBERON:0001003,5.58e-10,15;UBERON:0007376,5.58e-10,15;UBERON:0007383,5.58e-10,15;UBERON:0001708,7.16e-10,4;UBERON:0008895,7.16e-10,4;UBERON:0011159,4.53e-08,5;UBERON:0003102,1.33e-07,99;UBERON:0010188,7.30e-07,6;UBERON:0002539,7.30e-07,6;UBERON:0008816,7.30e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0.6024118375565,0.369754010166788,0,6.11327699695913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,0.370784442784429,0.324547393654683,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54608682530637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07300799144152,0,1.00528972411631,0.277765335475589,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,1.87467667973554,0.839910640994298,1.13420077793909,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0,0,2.87132768998086,3.25030123018261,0,0,0,0,0,0,0,0,0,0.330569830721956,0,0.510450849978337,0.10115778085555,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0.673554789078584,2.68120910214315,0,0,0.43050537267123,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0.185803175125719,0.144269212976445,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568272293612826,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,3.52759689685049,1.77977555204936,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0,0,0,0,0,0,0,0,1.45963831372533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.979923974143776,0.435296032902013,0,0.51595809741485,0,0,0,0,0,0,0.274083849293502,0,0,0,0,0,0,0,0,0,0,1.36677789121976,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0,0,0,0,0,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,1.34173875039706,0,0,3.90721245121804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790446527591777,8.16010409152003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,1.17777262201231,0,0.550285795565037,0.462102664601353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511049710558381,0,0,0,0,0,1.49804183822513,0,0,0,3.19123370386714,0.222462803784138,0,0,0,0,0.431855182437243,0.47775168788705,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,2.49852889812322,0.892769693028288,2.11736923029415,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,1.83579893535567,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,0,0.129177819672012,0.186224142887574,0,0,0,0,0,0.336760265072938,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0.6024118375565,0.369754010166788,0,6.11327699695913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,0.370784442784429,0.324547393654683,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54608682530637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07300799144152,0,1.00528972411631,0.277765335475589,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,1.87467667973554,0.839910640994298,1.13420077793909,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0,0,2.87132768998086,3.25030123018261,0,0,0,0,0,0,0,0,0,0.330569830721956,0,0.510450849978337,0.10115778085555,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0.673554789078584,2.68120910214315,0,0,0.43050537267123,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0.185803175125719,0.144269212976445,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568272293612826,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,3.52759689685049,1.77977555204936,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0,0,0,0,0,0,0,0,1.45963831372533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.979923974143776,0.435296032902013,0,0.51595809741485,0,0,0,0,0,0,0.274083849293502,0,0,0,0,0,0,0,0,0,0,1.36677789121976,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0,0,0,0,0,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,1.34173875039706,0,0,3.90721245121804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790446527591777,8.16010409152003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,1.17777262201231,0,0.550285795565037,0.462102664601353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511049710558381,0,0,0,0,0,1.49804183822513,0,0,0,3.19123370386714,0.222462803784138,0,0,0,0,0.431855182437243,0.47775168788705,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,2.49852889812322,0.892769693028288,2.11736923029415,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,1.83579893535567,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,0,0.129177819672012,0.186224142887574,0,0,0,0,0,0.336760265072938,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:122430019..122430039,+ | |short_description=p@chr12:122430019..122430039,+ | ||
}} | }} |
Latest revision as of 06:02, 24 July 2015
Short description: | p@chr12:122430019..122430039, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:122430019..122430039, + |
Coexpression cluster: | C2193_Burkitt_lymphoma_Sebocyte_Keratinocyte_Tracheal_Gingival_Bronchial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 7.45e-23 | 14 |
sebum secreting cell | 1.36e-19 | 2 |
epithelial cell of sweat gland | 1.36e-19 | 2 |
epithelial cell of skin gland | 1.36e-19 | 2 |
acinar cell of sebaceous gland | 1.36e-19 | 2 |
mature B cell | 8.59e-19 | 2 |
pre-B-II cell | 8.59e-19 | 2 |
transitional stage B cell | 8.59e-19 | 2 |
small pre-B-II cell | 8.59e-19 | 2 |
immature B cell | 8.59e-19 | 2 |
epidermal cell | 1.71e-16 | 9 |
precursor B cell | 7.40e-13 | 3 |
epithelial cell of Malassez | 7.40e-13 | 3 |
antibody secreting cell | 2.74e-10 | 1 |
plasma cell | 2.74e-10 | 1 |
plasmablast | 2.74e-10 | 1 |
B-1 B cell | 3.01e-10 | 1 |
ecto-epithelial cell | 3.59e-09 | 34 |
acinar cell | 2.19e-08 | 5 |
keratinocyte | 3.92e-08 | 5 |
protein secreting cell | 4.00e-07 | 6 |
stratified squamous epithelial cell | 6.48e-07 | 6 |
keratin accumulating cell | 6.48e-07 | 6 |
stratified epithelial cell | 6.48e-07 | 6 |
keratinizing barrier epithelial cell | 6.48e-07 | 6 |
epithelial fate stem cell | 6.48e-07 | 6 |
stratified epithelial stem cell | 6.48e-07 | 6 |
surface ectodermal cell | 6.48e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
skin gland | 1.36e-19 | 2 |
epidermis gland | 1.36e-19 | 2 |
gland of integumental system | 1.36e-19 | 2 |
sebaceous gland | 1.36e-19 | 2 |
skin sebaceous gland | 1.36e-19 | 2 |
sweat gland | 1.36e-19 | 2 |
sweat gland placode | 1.36e-19 | 2 |
sebaceous gland placode | 1.36e-19 | 2 |
skin epidermis | 5.58e-10 | 15 |
outer epithelium | 5.58e-10 | 15 |
enveloping layer of ectoderm | 5.58e-10 | 15 |
jaw skeleton | 7.16e-10 | 4 |
splanchnocranium | 7.16e-10 | 4 |
primary subdivision of cranial skeletal system | 4.53e-08 | 5 |
surface structure | 1.33e-07 | 99 |
protuberance | 7.30e-07 | 6 |
pharyngeal arch | 7.30e-07 | 6 |
embryonic head | 7.30e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 4.67e-15 | 10 |
lymphatic system cancer | 3.01e-10 | 1 |
lymphosarcoma | 3.01e-10 | 1 |
skin squamous cell carcinoma | 3.61e-10 | 1 |
keratoacanthoma | 3.61e-10 | 1 |
non-small cell lung carcinoma | 2.54e-08 | 5 |