FFCP PHASE1:Hg19::chr1:1850703..1850724,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=339456 | |EntrezGene=339456 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27916 | |HGNC=27916 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NDY8,B1AKR3 | |UniProt=Q8NDY8,B1AKR3 | ||
|association_with_transcript=0bp_to_ENST00000310991,ENST00000416272_5end | |association_with_transcript=0bp_to_ENST00000310991,ENST00000416272_5end | ||
|cluster_id=chr1:1850703..1850724,- | |||
|coexpression_cluster_id=C31 | |coexpression_cluster_id=C31 | ||
|description=CAGE_peak_1_at_TMEM52_5end | |description=CAGE_peak_1_at_TMEM52_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000066!6.04e-08!254 | |ontology_enrichment_celltype=CL:0000066!6.04e-08!254 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.14e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0003104;1.41e-07;31!UBERON:0009117;1.67e-07;10!UBERON:0005564;1.67e-07;10 | |ontology_enrichment_development_v019=UBERON:0003104;1.41e-07;31!UBERON:0009117;1.67e-07;10!UBERON:0005564;1.67e-07;10 | ||
|ontology_enrichment_disease=DOID:0050687!5.59e-11!143;DOID:305!2.54e-09!106;DOID:162!9.12e-07!235 | |ontology_enrichment_disease=DOID:0050687!5.59e-11!143;DOID:305!2.54e-09!106;DOID:162!9.12e-07!235 | ||
|ontology_enrichment_disease_v019=DOID:3095;7.74e-08;22!DOID:2994;7.74e-08;22 | |ontology_enrichment_disease_v019=DOID:3095;7.74e-08;22!DOID:2994;7.74e-08;22 | ||
|ontology_enrichment_disease_v019_2=DOID:0050687,9.51e-11,143;DOID:305,1.66e-09,106;DOID:3095,1.06e-07,22;DOID:2994,1.06e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0005177!1.67e-10!107;UBERON:0004119!2.53e-10!169;UBERON:0000925!2.53e-10!169;UBERON:0006595!2.53e-10!169;UBERON:0001007!3.33e-10!155;UBERON:0001555!3.33e-10!155;UBERON:0007026!3.33e-10!155;UBERON:0004921!3.66e-10!129;UBERON:0004185!3.66e-10!129;UBERON:0000466!1.71e-08!126;UBERON:0000481!7.22e-08!347;UBERON:0000077!9.62e-08!130;UBERON:0001041!1.66e-07!98;UBERON:0000464!1.87e-07!104 | |ontology_enrichment_uberon=UBERON:0005177!1.67e-10!107;UBERON:0004119!2.53e-10!169;UBERON:0000925!2.53e-10!169;UBERON:0006595!2.53e-10!169;UBERON:0001007!3.33e-10!155;UBERON:0001555!3.33e-10!155;UBERON:0007026!3.33e-10!155;UBERON:0004921!3.66e-10!129;UBERON:0004185!3.66e-10!129;UBERON:0000466!1.71e-08!126;UBERON:0000481!7.22e-08!347;UBERON:0000077!9.62e-08!130;UBERON:0001041!1.66e-07!98;UBERON:0000464!1.87e-07!104 | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;4.92e-08;49 | |ontology_enrichment_uberon_v019=UBERON:0000922;4.92e-08;49 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,4.72e-09,101;UBERON:0004119,1.75e-07,160;UBERON:0000925,1.75e-07,160;UBERON:0006595,1.75e-07,160;UBERON:0001007,4.30e-07,145;UBERON:0001555,4.30e-07,145;UBERON:0007026,4.30e-07,145;UBERON:0009569,5.09e-07,112;UBERON:0004921,8.62e-07,118 | |||
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| ||
|short_description=p1@TMEM52 | |short_description=p1@TMEM52 | ||
}} | }} |
Latest revision as of 05:57, 19 September 2015
Short description: | p1@TMEM52 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMEM52_5end |
Coexpression cluster: | C31_skeletal_tongue_diaphragm_throat_penis_skin_trachea |
Association with transcript: | 0bp_to_ENST00000310991, ENST00000416272_5end |
EntrezGene: | TMEM52 |
HGNC: | 27916 |
UniProt: | Q8NDY8B1AKR3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.14e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 4.72e-09 | 101 |
endoderm-derived structure | 1.75e-07 | 160 |
endoderm | 1.75e-07 | 160 |
presumptive endoderm | 1.75e-07 | 160 |
digestive system | 4.30e-07 | 145 |
digestive tract | 4.30e-07 | 145 |
primitive gut | 4.30e-07 | 145 |
subdivision of trunk | 5.09e-07 | 112 |
subdivision of digestive tract | 8.62e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 9.51e-11 | 143 |
carcinoma | 1.66e-09 | 106 |
germ cell and embryonal cancer | 1.06e-07 | 22 |
germ cell cancer | 1.06e-07 | 22 |