FFCP PHASE1:Hg19::chr5:145439461..145439472,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=153769 | |EntrezGene=153769 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=26299 | |HGNC=26299 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=109bp_to_uc011dbo.1_5end | |association_with_transcript=109bp_to_uc011dbo.1_5end | ||
|cluster_id=chr5:145439461..145439472,+ | |||
|coexpression_cluster_id=C20 | |coexpression_cluster_id=C20 | ||
|description=CAGE_peak_9_at_SH3RF2_5end | |description=CAGE_peak_9_at_SH3RF2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0010226;2.16e-26;1!UBERON:0010227;2.78e-26;1!UBERON:0004140;5.23e-26;1!UBERON:0005062;1.34e-25;4!UBERON:0007284;1.34e-25;4 | |ontology_enrichment_development_v019=UBERON:0010226;2.16e-26;1!UBERON:0010227;2.78e-26;1!UBERON:0004140;5.23e-26;1!UBERON:0005062;1.34e-25;4!UBERON:0007284;1.34e-25;4 | ||
|ontology_enrichment_disease=DOID:114!4.09e-18!2;DOID:178!6.88e-10!1;DOID:326!6.88e-10!1;DOID:3978!6.88e-10!1;DOID:3394!6.88e-10!1;DOID:5844!6.88e-10!1;DOID:1287!1.62e-09!4 | |ontology_enrichment_disease=DOID:114!4.09e-18!2;DOID:178!6.88e-10!1;DOID:326!6.88e-10!1;DOID:3978!6.88e-10!1;DOID:3394!6.88e-10!1;DOID:5844!6.88e-10!1;DOID:1287!1.62e-09!4 | ||
|ontology_enrichment_disease_v019=DOID:114;1.24e-49;2!DOID:178;1.11e-25;1!DOID:326;1.11e-25;1!DOID:3978;1.11e-25;1!DOID:3394;1.11e-25;1!DOID:5844;1.11e-25;1!DOID:1287;1.95e-25;4 | |ontology_enrichment_disease_v019=DOID:114;1.24e-49;2!DOID:178;1.11e-25;1!DOID:326;1.11e-25;1!DOID:3978;1.11e-25;1!DOID:3394;1.11e-25;1!DOID:5844;1.11e-25;1!DOID:1287;1.95e-25;4 | ||
|ontology_enrichment_disease_v019_2=DOID:114,1.40e-49,2;DOID:178,1.26e-25,1;DOID:326,1.26e-25,1;DOID:3978,1.26e-25,1;DOID:3394,1.26e-25,1;DOID:5844,1.26e-25,1;DOID:1287,2.08e-25,4 | |||
|ontology_enrichment_uberon=UBERON:0007100!2.05e-19!27;UBERON:0004151!1.15e-12!3;UBERON:0003978!1.71e-12!3;UBERON:0009751!1.71e-12!3;UBERON:0000946!1.71e-12!3;UBERON:0002523!1.71e-12!3;UBERON:0005983!1.71e-12!3;UBERON:0002165!1.71e-12!3;UBERON:0002062!1.71e-12!3;UBERON:0007280!1.71e-12!3;UBERON:0007023!8.26e-12!115;UBERON:0002084!3.74e-10!1;UBERON:0002082!3.74e-10!1;UBERON:0004706!3.74e-10!1;UBERON:0002079!4.09e-10!1;UBERON:0002146!4.46e-10!1;UBERON:0005623!4.46e-10!1;UBERON:0002135!6.31e-10!1;UBERON:0002022!1.91e-09!1;UBERON:0000948!6.65e-09!24;UBERON:0005498!6.65e-09!24;UBERON:0004140!6.65e-09!24;UBERON:0009881!6.65e-09!24;UBERON:0004141!6.65e-09!24;UBERON:0003084!6.65e-09!24;UBERON:0007005!6.65e-09!24;UBERON:0004139!6.65e-09!24;UBERON:0004291!6.65e-09!24;UBERON:0003103!6.06e-07!69 | |ontology_enrichment_uberon=UBERON:0007100!2.05e-19!27;UBERON:0004151!1.15e-12!3;UBERON:0003978!1.71e-12!3;UBERON:0009751!1.71e-12!3;UBERON:0000946!1.71e-12!3;UBERON:0002523!1.71e-12!3;UBERON:0005983!1.71e-12!3;UBERON:0002165!1.71e-12!3;UBERON:0002062!1.71e-12!3;UBERON:0007280!1.71e-12!3;UBERON:0007023!8.26e-12!115;UBERON:0002084!3.74e-10!1;UBERON:0002082!3.74e-10!1;UBERON:0004706!3.74e-10!1;UBERON:0002079!4.09e-10!1;UBERON:0002146!4.46e-10!1;UBERON:0005623!4.46e-10!1;UBERON:0002135!6.31e-10!1;UBERON:0002022!1.91e-09!1;UBERON:0000948!6.65e-09!24;UBERON:0005498!6.65e-09!24;UBERON:0004140!6.65e-09!24;UBERON:0009881!6.65e-09!24;UBERON:0004141!6.65e-09!24;UBERON:0003084!6.65e-09!24;UBERON:0007005!6.65e-09!24;UBERON:0004139!6.65e-09!24;UBERON:0004291!6.65e-09!24;UBERON:0003103!6.06e-07!69 | ||
|ontology_enrichment_uberon_v019=UBERON:0007100;7.62e-63;25!UBERON:0004151;2.81e-34;3!UBERON:0003978;9.89e-34;3!UBERON:0000946;9.89e-34;3!UBERON:0000948;2.08e-28;22!UBERON:0002084;2.16e-26;1!UBERON:0002082;2.16e-26;1!UBERON:0002079;2.78e-26;1!UBERON:0002146;3.58e-26;1!UBERON:0005623;3.58e-26;1!UBERON:0002135;1.11e-25;1!UBERON:0002081;7.30e-14;2!UBERON:0002133;1.46e-13;2!UBERON:0003103;1.74e-12;61!UBERON:0010313;7.12e-11;10 | |ontology_enrichment_uberon_v019=UBERON:0007100;7.62e-63;25!UBERON:0004151;2.81e-34;3!UBERON:0003978;9.89e-34;3!UBERON:0000946;9.89e-34;3!UBERON:0000948;2.08e-28;22!UBERON:0002084;2.16e-26;1!UBERON:0002082;2.16e-26;1!UBERON:0002079;2.78e-26;1!UBERON:0002146;3.58e-26;1!UBERON:0005623;3.58e-26;1!UBERON:0002135;1.11e-25;1!UBERON:0002081;7.30e-14;2!UBERON:0002133;1.46e-13;2!UBERON:0003103;1.74e-12;61!UBERON:0010313;7.12e-11;10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,3.24e-58,27;UBERON:0004151,2.81e-34,3;UBERON:0003978,9.10e-34,3;UBERON:0009751,9.10e-34,3;UBERON:0000946,9.10e-34,3;UBERON:0002523,9.10e-34,3;UBERON:0005983,9.10e-34,3;UBERON:0002165,9.10e-34,3;UBERON:0002062,9.10e-34,3;UBERON:0007280,9.10e-34,3;UBERON:0002084,2.16e-26,1;UBERON:0002082,2.16e-26,1;UBERON:0010226,2.16e-26,1;UBERON:0002079,2.78e-26,1;UBERON:0002146,3.58e-26,1;UBERON:0005623,3.58e-26,1;UBERON:0000948,4.23e-26,24;UBERON:0005498,4.23e-26,24;UBERON:0004140,4.23e-26,24;UBERON:0009881,4.23e-26,24;UBERON:0004141,4.23e-26,24;UBERON:0003084,4.23e-26,24;UBERON:0007005,4.23e-26,24;UBERON:0004139,4.23e-26,24;UBERON:0004291,4.23e-26,24;UBERON:0002135,9.79e-26,1;UBERON:0003103,2.94e-23,68;UBERON:0004797,4.07e-15,7;UBERON:0001009,3.77e-14,112;UBERON:0002081,7.30e-14,2;UBERON:0010227,7.30e-14,2;UBERON:0002133,1.37e-13,2;UBERON:0010313,6.94e-11,10;UBERON:0002342,6.94e-11,10;UBERON:0005062,6.94e-11,10;UBERON:0007023,1.15e-10,114;UBERON:0004872,9.83e-08,83 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.90995361781156,18.103673496923,0,3.79390100948083,7.2968428183217,16.0683449358148,16.1240333968143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,21.440859791201,22.5111269924247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.90995361781156,18.103673496923,0,3.79390100948083,7.2968428183217,16.0683449358148,16.1240333968143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,21.440859791201,22.5111269924247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p9@SH3RF2 | |short_description=p9@SH3RF2 | ||
}} | }} |
Latest revision as of 20:08, 15 September 2015
Short description: | p9@SH3RF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SH3RF2_5end |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | 109bp_to_uc011dbo.1_5end |
EntrezGene: | SH3RF2 |
HGNC: | 26299 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
heart disease | 1.40e-49 | 2 |
vascular disease | 1.26e-25 | 1 |
ischemia | 1.26e-25 | 1 |
extrinsic cardiomyopathy | 1.26e-25 | 1 |
myocardial ischemia | 1.26e-25 | 1 |
myocardial infarction | 1.26e-25 | 1 |
cardiovascular system disease | 2.08e-25 | 4 |