FFCP PHASE1:Hg19::chr1:64059117..64059128,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:64059117..64059128,+
|short_description=p4@PGM1
|description=CAGE_peak_4_at_PGM1_5end
|association_with_transcript=170bp_to_ENST00000371084,NM_002633,uc001...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5236 | |EntrezGene=5236 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8905 | |HGNC=8905 | ||
|TSSclassifier=strong | |||
|UniProt=P36871 | |UniProt=P36871 | ||
|association_with_transcript=170bp_to_ENST00000371084,NM_002633,uc001dbh.2_5end | |||
|cluster_id=chr1:64059117..64059128,+ | |||
|coexpression_cluster_id=C3992 | |||
|description=CAGE_peak_4_at_PGM1_5end | |||
|id=chr1:64059117..64059128,+ | |||
|ontology_enrichment_celltype=CL:0000136!5.43e-10!15;CL:0000055!9.63e-10!180;CL:0000325!3.51e-08!39;CL:0000680!4.34e-07!57;CL:0000056!4.34e-07!57;CL:0000355!4.34e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.32e-11;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,3.22e-12,15;CL:0000680,2.39e-07,58;CL:0000056,2.39e-07,58;CL:0000355,2.39e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!3.08e-12!365;UBERON:0000483!7.21e-10!309;UBERON:0000481!1.74e-09!347;UBERON:0000119!2.02e-09!312;UBERON:0002385!6.46e-09!63;UBERON:0001015!6.46e-09!63;UBERON:0000383!6.46e-09!63;UBERON:0001134!6.87e-09!61;UBERON:0002036!6.87e-09!61;UBERON:0003082!6.87e-09!61;UBERON:0005256!2.49e-07!143;UBERON:0000468!2.87e-07!659;UBERON:0000486!6.67e-07!82;UBERON:0004290!6.87e-07!70;UBERON:0000490!7.33e-07!138 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.83e-09,62;UBERON:0002036,1.83e-09,62;UBERON:0003082,1.83e-09,62;UBERON:0002385,3.08e-09,64;UBERON:0001015,3.08e-09,64;UBERON:0000383,3.08e-09,64;UBERON:0005256,4.91e-08,122;UBERON:0007524,2.00e-07,73;UBERON:0003077,2.94e-07,72;UBERON:0007285,2.94e-07,72;UBERON:0000483,3.03e-07,306;UBERON:0002329,5.83e-07,71;UBERON:0003059,5.83e-07,71;UBERON:0007282,5.83e-07,71;UBERON:0004290,5.83e-07,71;UBERON:0009618,5.83e-07,71;UBERON:0003104,7.34e-07,160;UBERON:0009142,7.34e-07,160;UBERON:0000119,7.41e-07,309 | |||
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| ||
|short_description=p4@PGM1 | |||
}} | }} |
Latest revision as of 20:59, 18 September 2015
Short description: | p4@PGM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PGM1_5end |
Coexpression cluster: | C3992_skeletal_Preadipocyte_mature_Adipocyte_Cardiac_heart_Hepatocyte |
Association with transcript: | 170bp_to_ENST00000371084, NM_002633, uc001dbh.2_5end |
EntrezGene: | PGM1 |
HGNC: | 8905 |
UniProt: | P36871 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 3.22e-12 | 15 |
muscle precursor cell | 2.39e-07 | 58 |
myoblast | 2.39e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.39e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 1.83e-09 | 62 |
striated muscle tissue | 1.83e-09 | 62 |
myotome | 1.83e-09 | 62 |
muscle tissue | 3.08e-09 | 64 |
musculature | 3.08e-09 | 64 |
musculature of body | 3.08e-09 | 64 |
trunk mesenchyme | 4.91e-08 | 122 |
dense mesenchyme tissue | 2.00e-07 | 73 |
paraxial mesoderm | 2.94e-07 | 72 |
presumptive paraxial mesoderm | 2.94e-07 | 72 |
epithelium | 3.03e-07 | 306 |
somite | 5.83e-07 | 71 |
presomitic mesoderm | 5.83e-07 | 71 |
presumptive segmental plate | 5.83e-07 | 71 |
dermomyotome | 5.83e-07 | 71 |
trunk paraxial mesoderm | 5.83e-07 | 71 |
mesenchyme | 7.34e-07 | 160 |
entire embryonic mesenchyme | 7.34e-07 | 160 |
cell layer | 7.41e-07 | 309 |