FFCP PHASE1:Hg19::chr13:78004839..78004857,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:78004839..78004857,+ | |||
|coexpression_cluster_id=C36 | |coexpression_cluster_id=C36 | ||
|description=CAGE_peak_at_chr13:78004839..78004857,+ | |description=CAGE_peak_at_chr13:78004839..78004857,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000945!5.26e-27!24;CL:0000826!5.26e-27!24;CL:0000838!8.76e-17!52;CL:0000542!1.84e-16!53;CL:0000051!1.84e-16!53;CL:0000080!6.90e-13!6;CL:0000988!2.13e-07!182;CL:0002087!4.53e-07!119;CL:0002031!9.05e-07!124 | |ontology_enrichment_celltype=CL:0000945!5.26e-27!24;CL:0000826!5.26e-27!24;CL:0000838!8.76e-17!52;CL:0000542!1.84e-16!53;CL:0000051!1.84e-16!53;CL:0000080!6.90e-13!6;CL:0000988!2.13e-07!182;CL:0002087!4.53e-07!119;CL:0002031!9.05e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.46e-22;24!CL:0000542;1.73e-07;53 | |ontology_enrichment_celltype_v019=CL:0000945;1.46e-22;24!CL:0000542;1.73e-07;53 | ||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.46e-22,24;CL:0000826,1.46e-22,24;CL:0000838,2.44e-16,52;CL:0000542,4.85e-16,53;CL:0000051,4.85e-16,53;CL:0002087,1.46e-07,115;CL:0002031,2.91e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000051;1.73e-07;53 | |ontology_enrichment_development_v019=CL:0000051;1.73e-07;53 | ||
|ontology_enrichment_disease=DOID:630!2.25e-19!1;DOID:0050177!2.25e-19!1;DOID:0050427!2.25e-19!1;DOID:2355!4.69e-19!1;DOID:74!3.27e-10!2;DOID:0060058!3.90e-08!10 | |ontology_enrichment_disease=DOID:630!2.25e-19!1;DOID:0050177!2.25e-19!1;DOID:0050427!2.25e-19!1;DOID:2355!4.69e-19!1;DOID:74!3.27e-10!2;DOID:0060058!3.90e-08!10 | ||
|ontology_enrichment_disease_v019=DOID:630;9.85e-34;1!DOID:0050177;9.85e-34;1!DOID:0050427;9.85e-34;1 | |ontology_enrichment_disease_v019=DOID:630;9.85e-34;1!DOID:0050177;9.85e-34;1!DOID:0050427;9.85e-34;1 | ||
|ontology_enrichment_disease_v019_2=DOID:630,9.85e-34,1;DOID:0050177,9.85e-34,1;DOID:0050427,9.85e-34,1 | |||
|ontology_enrichment_uberon=UBERON:0002331!4.19e-08!10;UBERON:0000358!4.19e-08!10;UBERON:0000307!4.19e-08!10;UBERON:0000091!4.19e-08!10;UBERON:0000087!4.19e-08!10;UBERON:0007806!4.19e-08!10;UBERON:0008780!4.19e-08!10;UBERON:0005728!4.19e-08!10;UBERON:0002106!2.32e-07!3;UBERON:0004854!2.32e-07!3;UBERON:0009034!2.32e-07!3;UBERON:0002095!2.32e-07!3;UBERON:0004782!2.32e-07!3;UBERON:0003281!2.32e-07!3;UBERON:0009664!2.32e-07!3;UBERON:0002296!2.32e-07!3;UBERON:0005602!2.32e-07!3;UBERON:0001179!2.32e-07!3;UBERON:0006293!2.32e-07!3 | |ontology_enrichment_uberon=UBERON:0002331!4.19e-08!10;UBERON:0000358!4.19e-08!10;UBERON:0000307!4.19e-08!10;UBERON:0000091!4.19e-08!10;UBERON:0000087!4.19e-08!10;UBERON:0007806!4.19e-08!10;UBERON:0008780!4.19e-08!10;UBERON:0005728!4.19e-08!10;UBERON:0002106!2.32e-07!3;UBERON:0004854!2.32e-07!3;UBERON:0009034!2.32e-07!3;UBERON:0002095!2.32e-07!3;UBERON:0004782!2.32e-07!3;UBERON:0003281!2.32e-07!3;UBERON:0009664!2.32e-07!3;UBERON:0002296!2.32e-07!3;UBERON:0005602!2.32e-07!3;UBERON:0001179!2.32e-07!3;UBERON:0006293!2.32e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0002106;2.74e-12;3!UBERON:0004177;6.78e-08;5!UBERON:0005057;6.78e-08;5 | |ontology_enrichment_uberon_v019=UBERON:0002106;2.74e-12;3!UBERON:0004177;6.78e-08;5!UBERON:0005057;6.78e-08;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,2.89e-12,3;UBERON:0004854,2.89e-12,3;UBERON:0009034,2.89e-12,3;UBERON:0002095,2.89e-12,3;UBERON:0004782,2.89e-12,3;UBERON:0003281,2.89e-12,3;UBERON:0009664,2.89e-12,3;UBERON:0002296,2.89e-12,3;UBERON:0005602,2.89e-12,3;UBERON:0001179,2.89e-12,3;UBERON:0006293,2.89e-12,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.40547463227464,9.85207073399349,10.9407986026014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738508832766417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0.417687798021821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.99485973130698,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29746970477194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60284246151616 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.40547463227464,9.85207073399349,10.9407986026014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738508832766417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0.417687798021821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.99485973130698,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29746970477194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60284246151616 | ||
|short_description=p@chr13:78004839..78004857,+ | |short_description=p@chr13:78004839..78004857,+ | ||
}} | }} |
Latest revision as of 17:14, 24 July 2015
Short description: | p@chr13:78004839..78004857, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:78004839..78004857, + |
Coexpression cluster: | C36_B_b_splenic_plasma_xeroderma_adrenal_Burkitt |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.46e-22 | 24 |
pro-B cell | 1.46e-22 | 24 |
lymphoid lineage restricted progenitor cell | 2.44e-16 | 52 |
lymphocyte | 4.85e-16 | 53 |
common lymphoid progenitor | 4.85e-16 | 53 |
nongranular leukocyte | 1.46e-07 | 115 |
hematopoietic lineage restricted progenitor cell | 2.91e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
spleen | 2.89e-12 | 3 |
gastrointestinal system mesentery | 2.89e-12 | 3 |
stomach region | 2.89e-12 | 3 |
mesentery | 2.89e-12 | 3 |
gastrointestinal system serosa | 2.89e-12 | 3 |
mesentery of stomach | 2.89e-12 | 3 |
gut mesentery | 2.89e-12 | 3 |
dorsal mesentery | 2.89e-12 | 3 |
dorsal mesogastrium | 2.89e-12 | 3 |
peritoneal cavity | 2.89e-12 | 3 |
spleen primordium | 2.89e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 9.85e-34 | 1 |
monogenic disease | 9.85e-34 | 1 |
xeroderma pigmentosum | 9.85e-34 | 1 |