FFCP PHASE1:Hg19::chr4:55143473..55143484,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5156 | |EntrezGene=5156 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8803 | |HGNC=8803 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=130bp_to_ENST00000507536,uc003hao.1_5end | |association_with_transcript=130bp_to_ENST00000507536,uc003hao.1_5end | ||
|cluster_id=chr4:55143473..55143484,+ | |||
|coexpression_cluster_id=C7 | |coexpression_cluster_id=C7 | ||
|description=CAGE_peak_13_at_PDGFRA_5end | |description=CAGE_peak_13_at_PDGFRA_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!5.48e-09!5;CL:0000839!6.50e-09!70;CL:0000557!4.78e-07!71;CL:0002194!5.53e-07!63;CL:0000576!5.53e-07!63;CL:0000040!5.53e-07!63;CL:0000559!5.53e-07!63 | |ontology_enrichment_celltype=CL:0002322!5.48e-09!5;CL:0000839!6.50e-09!70;CL:0000557!4.78e-07!71;CL:0002194!5.53e-07!63;CL:0000576!5.53e-07!63;CL:0000040!5.53e-07!63;CL:0000559!5.53e-07!63 | ||
|ontology_enrichment_celltype_v019=CL:0000473;3.57e-22;39!CL:0000234;3.57e-22;39!CL:0000860;1.27e-19;33!CL:0002057;1.27e-19;33!CL:0000576;3.17e-11;48!CL:0000235;6.98e-07;6 | |ontology_enrichment_celltype_v019=CL:0000473;3.57e-22;39!CL:0000234;3.57e-22;39!CL:0000860;1.27e-19;33!CL:0002057;1.27e-19;33!CL:0000576;3.17e-11;48!CL:0000235;6.98e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.35e-21,48;CL:0000234,1.35e-21,48;CL:0002194,6.18e-17,59;CL:0000576,6.18e-17,59;CL:0000040,6.18e-17,59;CL:0000559,6.18e-17,59;CL:0000860,9.72e-17,42;CL:0002057,9.72e-17,42;CL:0002009,2.47e-16,61;CL:0000839,5.51e-15,66;CL:0000557,9.71e-15,67;CL:0000766,1.31e-13,72;CL:0002087,1.72e-09,115;CL:0002031,5.13e-09,120;CL:0000763,1.55e-08,108;CL:0000049,1.55e-08,108;CL:0000738,9.87e-08,136;CL:0000235,6.68e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;4.16e-13;42 | |ontology_enrichment_development_v019=CL:0002057;4.16e-13;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2513;2.08e-10;1 | |ontology_enrichment_disease_v019=DOID:2513;2.08e-10;1 | ||
|ontology_enrichment_disease_v019_2=DOID:2513,2.08e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0002193!1.31e-10!112;UBERON:0002390!5.59e-10!102;UBERON:0003061!5.59e-10!102;UBERON:0003688!1.05e-07!6;UBERON:0002358!1.05e-07!6;UBERON:0003684!1.05e-07!6;UBERON:0001178!1.05e-07!6;UBERON:0000178!2.48e-07!15;UBERON:0000179!2.48e-07!15;UBERON:0000463!2.48e-07!15 | |ontology_enrichment_uberon=UBERON:0002193!1.31e-10!112;UBERON:0002390!5.59e-10!102;UBERON:0003061!5.59e-10!102;UBERON:0003688!1.05e-07!6;UBERON:0002358!1.05e-07!6;UBERON:0003684!1.05e-07!6;UBERON:0001178!1.05e-07!6;UBERON:0000178!2.48e-07!15;UBERON:0000179!2.48e-07!15;UBERON:0000463!2.48e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.56e-10;15!UBERON:0000179;9.56e-10;15!UBERON:0000463;9.56e-10;15 | |ontology_enrichment_uberon_v019=UBERON:0000178;9.56e-10;15!UBERON:0000179;9.56e-10;15!UBERON:0000463;9.56e-10;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.34e-18,98;UBERON:0003061,2.34e-18,98;UBERON:0002193,1.91e-16,108;UBERON:0002371,8.20e-13,76;UBERON:0001474,9.26e-12,82;UBERON:0004765,1.43e-10,90;UBERON:0002405,3.53e-10,93;UBERON:0000178,8.71e-10,15;UBERON:0000179,8.71e-10,15;UBERON:0000463,8.71e-10,15;UBERON:0001434,2.38e-09,100;UBERON:0003081,1.33e-07,203 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.422863212287913,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,7.19230980805376,7.17249978281482,6.62150243688039,0,0,0,0,0,0.224723484445085,0,0.320929027076094,0,10.2253903057882,8.97586459297343,13.2129672665135,0,0,0,5.02497330513487,4.17186334736161,11.2938199246661,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324547393654683,0.174129737299267,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0.81014194788176,0,0,0.112611480483322,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0,0.609868530647977,0.132529768321485,0.232387885739037,0.310983165046111,0.756962552626885,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288732895522148,0.462985512576611,0,0,0,0.492434012174795,2.57404691653161,1.48631162288728,0.93733833986777,0.335964256397719,0.283550194484773,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,1.20575750823834,3.48613383440118,1.49959486773086,0,0,0,0.479249710983165,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460385919864187,0.561320188866147,0.384417447767103,0.511707249066704,0.160853921143607,0,0.154209693802656,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0.219259876645935,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0.429374660225974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.52234282769651,4.58782324285425,0.569647187174163,0.238231775457789,1.64544909234478,0.648473311192717,1.08006287447623,0.79312517629427,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0,0.111308705022906,1.48323486804084,0,0,0,0,0.102268682502155,0,2.48831670129446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0.470940769185074,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0.240476460754601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0.795229689809303,0,0.160753148465019,0.137539436597234,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0.246277562248017,0,0.113312091520126,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.53168342911599,0.521745061811734,0.150257608997218,2.28483127301277,0,0,0.214821114084977,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39997479170986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.756998549010474,0.109265571963696,0,0.305966489225945,0,0.459474497674225,0,0,0.267964130156178,0,0,0,0.23806443146374,0.0645889098360061,0.124149428591716,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 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|phase1_expression=0.181678379270557,0.214100523890983,0.422863212287913,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,7.19230980805376,7.17249978281482,6.62150243688039,0,0,0,0,0,0.224723484445085,0,0.320929027076094,0,10.2253903057882,8.97586459297343,13.2129672665135,0,0,0,5.02497330513487,4.17186334736161,11.2938199246661,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324547393654683,0.174129737299267,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0.81014194788176,0,0,0.112611480483322,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0,0.609868530647977,0.132529768321485,0.232387885739037,0.310983165046111,0.756962552626885,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288732895522148,0.462985512576611,0,0,0,0.492434012174795,2.57404691653161,1.48631162288728,0.93733833986777,0.335964256397719,0.283550194484773,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,1.20575750823834,3.48613383440118,1.49959486773086,0,0,0,0.479249710983165,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460385919864187,0.561320188866147,0.384417447767103,0.511707249066704,0.160853921143607,0,0.154209693802656,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0.219259876645935,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0.429374660225974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.52234282769651,4.58782324285425,0.569647187174163,0.238231775457789,1.64544909234478,0.648473311192717,1.08006287447623,0.79312517629427,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0,0.111308705022906,1.48323486804084,0,0,0,0,0.102268682502155,0,2.48831670129446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0.470940769185074,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0.240476460754601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0.795229689809303,0,0.160753148465019,0.137539436597234,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0.246277562248017,0,0.113312091520126,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.53168342911599,0.521745061811734,0.150257608997218,2.28483127301277,0,0,0.214821114084977,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39997479170986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.756998549010474,0.109265571963696,0,0.305966489225945,0,0.459474497674225,0,0,0.267964130156178,0,0,0,0.23806443146374,0.0645889098360061,0.124149428591716,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p13@PDGFRA | |short_description=p13@PDGFRA | ||
}} | }} |
Latest revision as of 00:53, 18 September 2015
Short description: | p13@PDGFRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_PDGFRA_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 130bp_to_ENST00000507536, uc003hao.1_5end |
EntrezGene: | PDGFRA |
HGNC: | 8803 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.35e-21 | 48 |
phagocyte | 1.35e-21 | 48 |
monopoietic cell | 6.18e-17 | 59 |
monocyte | 6.18e-17 | 59 |
monoblast | 6.18e-17 | 59 |
promonocyte | 6.18e-17 | 59 |
classical monocyte | 9.72e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.72e-17 | 42 |
macrophage dendritic cell progenitor | 2.47e-16 | 61 |
myeloid lineage restricted progenitor cell | 5.51e-15 | 66 |
granulocyte monocyte progenitor cell | 9.71e-15 | 67 |
myeloid leukocyte | 1.31e-13 | 72 |
nongranular leukocyte | 1.72e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 5.13e-09 | 120 |
myeloid cell | 1.55e-08 | 108 |
common myeloid progenitor | 1.55e-08 | 108 |
leukocyte | 9.87e-08 | 136 |
macrophage | 6.68e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.34e-18 | 98 |
blood island | 2.34e-18 | 98 |
hemolymphoid system | 1.91e-16 | 108 |
bone marrow | 8.20e-13 | 76 |
bone element | 9.26e-12 | 82 |
skeletal element | 1.43e-10 | 90 |
immune system | 3.53e-10 | 93 |
blood | 8.71e-10 | 15 |
haemolymphatic fluid | 8.71e-10 | 15 |
organism substance | 8.71e-10 | 15 |
skeletal system | 2.38e-09 | 100 |
lateral plate mesoderm | 1.33e-07 | 203 |
Ontology term | p-value | n |
---|---|---|
basal cell carcinoma | 2.08e-10 | 1 |