FFCP PHASE1:Hg19::chr22:31644047..31644049,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3985 | |EntrezGene=3985 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6614 | |HGNC=6614 | ||
|TSSclassifier=strong | |||
|UniProt=C9JK61 | |UniProt=C9JK61 | ||
|association_with_transcript=-294bp_to_ENST00000425203_5end | |association_with_transcript=-294bp_to_ENST00000425203_5end | ||
|cluster_id=chr22:31644047..31644049,+ | |||
|coexpression_cluster_id=C13 | |coexpression_cluster_id=C13 | ||
|description=CAGE_peak_8_at_LIMK2_5end | |description=CAGE_peak_8_at_LIMK2_5end | ||
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|ontology_enrichment_celltype=CL:0002057!2.41e-14!42;CL:0000766!1.15e-13!76;CL:0000860!6.98e-13!45;CL:0000763!1.72e-12!112;CL:0000049!1.72e-12!112;CL:0002009!8.49e-12!65;CL:0000557!9.96e-12!71;CL:0002194!2.59e-11!63;CL:0000576!2.59e-11!63;CL:0000040!2.59e-11!63;CL:0000559!2.59e-11!63;CL:0000839!5.78e-11!70;CL:0002032!5.51e-10!165;CL:0000837!5.51e-10!165;CL:0000037!1.26e-09!172;CL:0000566!1.26e-09!172;CL:0000988!1.85e-09!182;CL:0000738!2.34e-09!140;CL:0002087!6.90e-08!119;CL:0002031!1.23e-07!124 | |ontology_enrichment_celltype=CL:0002057!2.41e-14!42;CL:0000766!1.15e-13!76;CL:0000860!6.98e-13!45;CL:0000763!1.72e-12!112;CL:0000049!1.72e-12!112;CL:0002009!8.49e-12!65;CL:0000557!9.96e-12!71;CL:0002194!2.59e-11!63;CL:0000576!2.59e-11!63;CL:0000040!2.59e-11!63;CL:0000559!2.59e-11!63;CL:0000839!5.78e-11!70;CL:0002032!5.51e-10!165;CL:0000837!5.51e-10!165;CL:0000037!1.26e-09!172;CL:0000566!1.26e-09!172;CL:0000988!1.85e-09!182;CL:0000738!2.34e-09!140;CL:0002087!6.90e-08!119;CL:0002031!1.23e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000775;5.87e-30;3!CL:0000860;7.26e-24;33!CL:0002057;7.26e-24;33!CL:0000473;5.95e-20;39!CL:0000234;5.95e-20;39!CL:0000094;1.42e-19;8!CL:0000081;2.63e-14;11!CL:0000576;3.63e-14;48!CL:0000766;1.55e-10;69!CL:0000763;1.24e-09;100 | |ontology_enrichment_celltype_v019=CL:0000775;5.87e-30;3!CL:0000860;7.26e-24;33!CL:0002057;7.26e-24;33!CL:0000473;5.95e-20;39!CL:0000234;5.95e-20;39!CL:0000094;1.42e-19;8!CL:0000081;2.63e-14;11!CL:0000576;3.63e-14;48!CL:0000766;1.55e-10;69!CL:0000763;1.24e-09;100 | ||
|ontology_enrichment_celltype_v019_2=CL:0000775,5.59e-30,3;CL:0000766,1.87e-23,72;CL:0000860,2.74e-21,42;CL:0002057,2.74e-21,42;CL:0000094,1.60e-19,8;CL:0000473,1.89e-18,48;CL:0000234,1.89e-18,48;CL:0000763,2.52e-17,108;CL:0000049,2.52e-17,108;CL:0000738,2.57e-15,136;CL:0002194,1.79e-14,59;CL:0000576,1.79e-14,59;CL:0000040,1.79e-14,59;CL:0000559,1.79e-14,59;CL:0002032,2.31e-14,161;CL:0000837,2.31e-14,161;CL:0000081,2.86e-14,11;CL:0002009,5.86e-14,61;CL:0000037,1.18e-13,168;CL:0000988,7.90e-13,177;CL:0000839,8.28e-13,66;CL:0000557,1.34e-12,67;CL:0002087,6.25e-10,115;CL:0002031,1.93e-09,120 | |||
|ontology_enrichment_development_v019=CL:0002057;1.31e-15;42!UBERON:0005425;1.21e-10;1!CL:0000049;1.01e-07;108 | |ontology_enrichment_development_v019=CL:0002057;1.31e-15;42!UBERON:0005425;1.21e-10;1!CL:0000049;1.01e-07;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.92e-12!112;UBERON:0002390!4.72e-12!102;UBERON:0003061!4.72e-12!102;UBERON:0002371!2.06e-09!80;UBERON:0001474!8.74e-09!86;UBERON:0002405!3.16e-07!115 | |ontology_enrichment_uberon=UBERON:0002193!2.92e-12!112;UBERON:0002390!4.72e-12!102;UBERON:0003061!4.72e-12!102;UBERON:0002371!2.06e-09!80;UBERON:0001474!8.74e-09!86;UBERON:0002405!3.16e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.21e-10;1!UBERON:0001785;1.21e-10;1!UBERON:0002464;1.21e-10;1!UBERON:0004904;1.21e-10;1!UBERON:0001021;1.21e-10;1 | |ontology_enrichment_uberon_v019=UBERON:0000941;1.21e-10;1!UBERON:0001785;1.21e-10;1!UBERON:0002464;1.21e-10;1!UBERON:0004904;1.21e-10;1!UBERON:0001021;1.21e-10;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.67e-12,98;UBERON:0003061,5.67e-12,98;UBERON:0002371,5.92e-11,76;UBERON:0002193,1.06e-10,108;UBERON:0000941,1.21e-10,1;UBERON:0001785,1.21e-10,1;UBERON:0002464,1.21e-10,1;UBERON:0004904,1.21e-10,1;UBERON:0001021,1.21e-10,1;UBERON:0003902,1.21e-10,1;UBERON:0005425,1.21e-10,1;UBERON:0001474,4.69e-10,82;UBERON:0004765,4.84e-09,90;UBERON:0002405,1.05e-08,93;UBERON:0001434,5.33e-08,100 | |||
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| ||
|short_description=p8@LIMK2 | |short_description=p8@LIMK2 | ||
}} | }} |
Latest revision as of 20:09, 19 September 2015
Short description: | p8@LIMK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LIMK2_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | -294bp_to_ENST00000425203_5end |
EntrezGene: | LIMK2 |
HGNC: | 6614 |
UniProt: | C9JK61 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neutrophil | 5.59e-30 | 3 |
myeloid leukocyte | 1.87e-23 | 72 |
classical monocyte | 2.74e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.74e-21 | 42 |
granulocyte | 1.60e-19 | 8 |
defensive cell | 1.89e-18 | 48 |
phagocyte | 1.89e-18 | 48 |
myeloid cell | 2.52e-17 | 108 |
common myeloid progenitor | 2.52e-17 | 108 |
leukocyte | 2.57e-15 | 136 |
monopoietic cell | 1.79e-14 | 59 |
monocyte | 1.79e-14 | 59 |
monoblast | 1.79e-14 | 59 |
promonocyte | 1.79e-14 | 59 |
hematopoietic oligopotent progenitor cell | 2.31e-14 | 161 |
hematopoietic multipotent progenitor cell | 2.31e-14 | 161 |
blood cell | 2.86e-14 | 11 |
macrophage dendritic cell progenitor | 5.86e-14 | 61 |
hematopoietic stem cell | 1.18e-13 | 168 |
hematopoietic cell | 7.90e-13 | 177 |
myeloid lineage restricted progenitor cell | 8.28e-13 | 66 |
granulocyte monocyte progenitor cell | 1.34e-12 | 67 |
nongranular leukocyte | 6.25e-10 | 115 |
hematopoietic lineage restricted progenitor cell | 1.93e-09 | 120 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.67e-12 | 98 |
blood island | 5.67e-12 | 98 |
bone marrow | 5.92e-11 | 76 |
hemolymphoid system | 1.06e-10 | 108 |
cranial nerve II | 1.21e-10 | 1 |
cranial nerve | 1.21e-10 | 1 |
nerve trunk | 1.21e-10 | 1 |
nerve connecting eye with brain | 1.21e-10 | 1 |
nerve | 1.21e-10 | 1 |
retinal neural layer | 1.21e-10 | 1 |
presumptive neural retina | 1.21e-10 | 1 |
bone element | 4.69e-10 | 82 |
skeletal element | 4.84e-09 | 90 |
immune system | 1.05e-08 | 93 |
skeletal system | 5.33e-08 | 100 |