FFCP PHASE1:Hg19::chr15:59908801..59908817,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9245 | |EntrezGene=9245 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4205 | |HGNC=4205 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=71bp_to_ENST00000560210_5end | |association_with_transcript=71bp_to_ENST00000560210_5end | ||
|cluster_id=chr15:59908801..59908817,+ | |||
|coexpression_cluster_id=C184 | |coexpression_cluster_id=C184 | ||
|description=CAGE_peak_10_at_GCNT3_5end | |description=CAGE_peak_10_at_GCNT3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:1000507!3.38e-08!12;CL:1000494!3.38e-08!12 | |ontology_enrichment_celltype=CL:1000507!3.38e-08!12;CL:1000494!3.38e-08!12 | ||
|ontology_enrichment_celltype_v019=CL:0000167;7.02e-13;1!CL:0000164;7.02e-13;1!CL:0000502;7.02e-13;1!CL:0000172;7.02e-13;1!CL:0000173;7.02e-13;1!CL:0002149;3.02e-08;6!CL:0002255;3.02e-08;6 | |ontology_enrichment_celltype_v019=CL:0000167;7.02e-13;1!CL:0000164;7.02e-13;1!CL:0000502;7.02e-13;1!CL:0000172;7.02e-13;1!CL:0000173;7.02e-13;1!CL:0002149;3.02e-08;6!CL:0002255;3.02e-08;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000167,7.03e-13,1;CL:0000164,7.03e-13,1;CL:0000502,7.03e-13,1;CL:0000172,7.03e-13,1;CL:0000173,7.03e-13,1;CL:0002351,7.03e-13,1;CL:0002149,3.02e-08,6;CL:0002255,3.02e-08,6 | |||
|ontology_enrichment_development_v019=CL:0002351;7.02e-13;1!UBERON:0008801;9.91e-13;1!UBERON:0008814;8.76e-07;2!UBERON:0010056;8.76e-07;2 | |ontology_enrichment_development_v019=CL:0002351;7.02e-13;1!UBERON:0008801;9.91e-13;1!UBERON:0008814;8.76e-07;2!UBERON:0010056;8.76e-07;2 | ||
|ontology_enrichment_disease=DOID:4468!3.62e-09!2 | |ontology_enrichment_disease=DOID:4468!3.62e-09!2 | ||
|ontology_enrichment_disease_v019=DOID:4430;7.02e-13;1!DOID:3001;3.02e-08;6!DOID:4468;8.76e-07;2 | |ontology_enrichment_disease_v019=DOID:4430;7.02e-13;1!DOID:3001;3.02e-08;6!DOID:4468;8.76e-07;2 | ||
|ontology_enrichment_disease_v019_2=DOID:4430,7.03e-13,1;DOID:3001,3.02e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0003127!1.54e-09!2;UBERON:0001829!3.76e-09!2;UBERON:0007023!1.07e-08!115;UBERON:0009773!3.38e-08!12;UBERON:0001231!3.38e-08!12;UBERON:0004810!3.38e-08!12;UBERON:0000078!1.06e-07!18;UBERON:0004119!1.71e-07!169;UBERON:0000925!1.71e-07!169;UBERON:0006595!1.71e-07!169;UBERON:0001044!9.14e-07!6;UBERON:0003293!9.14e-07!6;UBERON:0003294!9.14e-07!6;UBERON:0010047!9.14e-07!6;UBERON:0000167!9.14e-07!6 | |ontology_enrichment_uberon=UBERON:0003127!1.54e-09!2;UBERON:0001829!3.76e-09!2;UBERON:0007023!1.07e-08!115;UBERON:0009773!3.38e-08!12;UBERON:0001231!3.38e-08!12;UBERON:0004810!3.38e-08!12;UBERON:0000078!1.06e-07!18;UBERON:0004119!1.71e-07!169;UBERON:0000925!1.71e-07!169;UBERON:0006595!1.71e-07!169;UBERON:0001044!9.14e-07!6;UBERON:0003293!9.14e-07!6;UBERON:0003294!9.14e-07!6;UBERON:0010047!9.14e-07!6;UBERON:0000167!9.14e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0003127;3.30e-23;2!UBERON:0001723;1.42e-15;3!UBERON:0001033;1.42e-15;3!UBERON:0001831;9.91e-13;1!UBERON:0001567;9.91e-13;1!UBERON:0002372;2.60e-12;1!UBERON:0001961;2.60e-12;1!UBERON:0001744;2.60e-12;1!UBERON:0001042;2.60e-12;1!UBERON:0001735;2.60e-12;1!UBERON:0000165;7.33e-10;28!UBERON:0001044;1.55e-08;6!UBERON:0003293;1.55e-08;6!UBERON:0003294;1.55e-08;6!UBERON:0010047;1.55e-08;6!UBERON:0003408;1.55e-08;6!UBERON:0000167;1.55e-08;6!UBERON:0003126;2.73e-07;7!UBERON:0001005;2.73e-07;7!UBERON:0001829;5.41e-07;2!UBERON:0004089;5.41e-07;2!UBERON:0000341;8.76e-07;2!UBERON:0006562;8.76e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0003127;3.30e-23;2!UBERON:0001723;1.42e-15;3!UBERON:0001033;1.42e-15;3!UBERON:0001831;9.91e-13;1!UBERON:0001567;9.91e-13;1!UBERON:0002372;2.60e-12;1!UBERON:0001961;2.60e-12;1!UBERON:0001744;2.60e-12;1!UBERON:0001042;2.60e-12;1!UBERON:0001735;2.60e-12;1!UBERON:0000165;7.33e-10;28!UBERON:0001044;1.55e-08;6!UBERON:0003293;1.55e-08;6!UBERON:0003294;1.55e-08;6!UBERON:0010047;1.55e-08;6!UBERON:0003408;1.55e-08;6!UBERON:0000167;1.55e-08;6!UBERON:0003126;2.73e-07;7!UBERON:0001005;2.73e-07;7!UBERON:0001829;5.41e-07;2!UBERON:0004089;5.41e-07;2!UBERON:0000341;8.76e-07;2!UBERON:0006562;8.76e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003127,2.49e-23,2;UBERON:0001723,2.76e-15,3;UBERON:0001033,2.76e-15,3;UBERON:0010056,2.76e-15,3;UBERON:0001831,9.92e-13,1;UBERON:0001567,9.92e-13,1;UBERON:0008801,9.92e-13,1;UBERON:0002372,1.57e-12,1;UBERON:0001961,1.57e-12,1;UBERON:0001744,1.57e-12,1;UBERON:0001735,1.57e-12,1;UBERON:0000166,1.59e-12,22;UBERON:0000161,1.05e-10,36;UBERON:0001042,2.17e-10,10;UBERON:0009145,2.17e-10,10;UBERON:0006562,1.70e-09,11;UBERON:0000165,1.76e-09,29;UBERON:0000930,1.76e-09,29;UBERON:0001044,1.55e-08,6;UBERON:0003293,1.55e-08,6;UBERON:0003294,1.55e-08,6;UBERON:0010047,1.55e-08,6;UBERON:0000167,1.55e-08,6;UBERON:0003126,2.52e-07,7;UBERON:0001005,2.52e-07,7;UBERON:0001829,5.41e-07,2;UBERON:0004089,5.41e-07,2;UBERON:0000341,7.20e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65745780084613,0,0,0,0.902399225814824,1.30926073077505,0,0,0.633309773357254,0,0,0,0,0,0,2.80363900349542,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382838137483752,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.597743964753209,0,0,0,0,0,0,0.537063524026827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.41827123283581,0.538651809526579,0,0,0,0,0.638002319463839,0.0915975934018623,0,0,0,0,0,0,0,0,0,1.05499032264014,0.979396848954886,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56203764501618,0,0,0,0,0,0,0,0.484945082442097,0,0.451961481561065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630445658393585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,4.38606213485746,0.496211178389294,0,0.511049710558381,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.313972371402056,0,1.12108865325516,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,5.59295566466361,0,0,0,1.3746412112643,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0.11294608203896,0,0,0.154348316215889,0,14.5798361872072,0,21.6822423333496,0,0,0,0,0,0,0,1.96409332466223,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,1.91910583710883,0,0,0,0,0.381882949668989,0.404234377916439,1.08858373948481,1.02669990325584,1.95320953742304,3.58611026963382,1.66330178273007,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65745780084613,0,0,0,0.902399225814824,1.30926073077505,0,0,0.633309773357254,0,0,0,0,0,0,2.80363900349542,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382838137483752,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.597743964753209,0,0,0,0,0,0,0.537063524026827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.41827123283581,0.538651809526579,0,0,0,0,0.638002319463839,0.0915975934018623,0,0,0,0,0,0,0,0,0,1.05499032264014,0.979396848954886,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56203764501618,0,0,0,0,0,0,0,0.484945082442097,0,0.451961481561065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630445658393585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,4.38606213485746,0.496211178389294,0,0.511049710558381,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.313972371402056,0,1.12108865325516,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,5.59295566466361,0,0,0,1.3746412112643,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0.11294608203896,0,0,0.154348316215889,0,14.5798361872072,0,21.6822423333496,0,0,0,0,0,0,0,1.96409332466223,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,1.91910583710883,0,0,0,0,0.381882949668989,0.404234377916439,1.08858373948481,1.02669990325584,1.95320953742304,3.58611026963382,1.66330178273007,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p10@GCNT3 | |short_description=p10@GCNT3 | ||
}} | }} |
Latest revision as of 09:11, 18 September 2015
Short description: | p10@GCNT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_GCNT3_5end |
Coexpression cluster: | C184_somatostatinoma_smallcell_nonsmall_small_gastrointestinal_pineal_thyroid |
Association with transcript: | 71bp_to_ENST00000560210_5end |
EntrezGene: | GCNT3 |
HGNC: | 4205 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 7.03e-13 | 1 |
enteroendocrine cell | 7.03e-13 | 1 |
type D enteroendocrine cell | 7.03e-13 | 1 |
somatostatin secreting cell | 7.03e-13 | 1 |
pancreatic D cell | 7.03e-13 | 1 |
progenitor cell of endocrine pancreas | 7.03e-13 | 1 |
epithelial cell of uterus | 3.02e-08 | 6 |
stromal cell of endometrium | 3.02e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
open tracheal system trachea | 2.49e-23 | 2 |
tongue | 2.76e-15 | 3 |
gustatory system | 2.76e-15 | 3 |
future tongue | 2.76e-15 | 3 |
parotid gland | 9.92e-13 | 1 |
cheek | 9.92e-13 | 1 |
parotid gland primordium | 9.92e-13 | 1 |
tonsil | 1.57e-12 | 1 |
mucosa-associated lymphoid tissue | 1.57e-12 | 1 |
lymphoid tissue | 1.57e-12 | 1 |
tonsillar ring | 1.57e-12 | 1 |
oral opening | 1.59e-12 | 22 |
orifice | 1.05e-10 | 36 |
chordate pharynx | 2.17e-10 | 10 |
pharyngeal region of foregut | 2.17e-10 | 10 |
pharynx | 1.70e-09 | 11 |
mouth | 1.76e-09 | 29 |
stomodeum | 1.76e-09 | 29 |
saliva-secreting gland | 1.55e-08 | 6 |
gland of oral region | 1.55e-08 | 6 |
gland of foregut | 1.55e-08 | 6 |
oral gland | 1.55e-08 | 6 |
oral cavity | 1.55e-08 | 6 |
trachea | 2.52e-07 | 7 |
respiratory airway | 2.52e-07 | 7 |
major salivary gland | 5.41e-07 | 2 |
midface | 5.41e-07 | 2 |
throat | 7.20e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 7.03e-13 | 1 |
female reproductive endometrioid cancer | 3.02e-08 | 6 |