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motif without matrices
[[Swissregulon:SRY.p1]]
[[Swissregulon:HOX(A,B,D)3.p1]]
doubled top motif tables
CNhs10855 & CNhs11062
CNhs11245 & CNhs11183
CNhs11248 & CNhs11185
CNhs11772 & CNhs12996
CNhs11781 & CNhs12997
== enrichment analysis ==
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$(document).ready(function() {
$(document).ready(function() {
var motifs = ['ZBT7A_f1','ZBTB16','ZBTB4!METH_f1','ZBTB4_si','ZBTB6_si','ZEP2_si','ZFP161','ZN219_f1','ZN333_f1','ZN350_f1','ZN384_f1','ZN423_f1','ZN589_f1','ZNF143','motif10','motif1026','motif103','motif1032','motif1044','motif1049','motif106','motif1068','motif1097','motif11','motif119','motif123','motif125','motif134','motif136','motif143','motif145','motif162','motif177','motif183','motif189','motif196','motif198','motif199','motif210','motif218','motif222','motif233','motif238','motif247','motif252','motif260','motif261','motif263','motif27','motif282','motif29','motif290','motif293','motif297','motif3','motif30','motif300','motif301','motif307','motif313','motif316','motif324','motif33','motif335','motif351','motif357','motif359','motif361','motif365','motif37','motif373','motif378','motif382','motif41','motif415','motif424','motif432','motif44','motif440','motif441','motif443','motif445','motif459','motif46','motif461','motif463','motif468','motif475','motif477','motif478','motif486','motif489','motif494','motif498','motif499','motif515','motif516','motif517','motif527','motif550','motif553','motif554','motif558','motif560','motif561','motif563','motif568','motif57','motif577','motif585','motif588','motif602','motif606','motif61','motif614','motif624','motif627','motif64','motif647','motif66','motif660','motif667','motif668','motif670','motif679','motif680','motif682','motif684','motif686','motif688','motif74','motif75','motif77','motif80','motif816','motif822','motif827','motif830','motif835','motif837','motif839','motif843','motif858','motif861','motif867','motif87','motif882','motif885','motif886','motif890','motif895','motif897','motif898','motif9','motif90','motif906','motif909','motif915','motif929','motif931','motif935','motif943','motif944','motif950','motif953','motif956','motif957','motif963','motif965','motif969','motif97','motif970','motif977','motif981','motif990','motif991','motif999','motif_AAGTCN','motif_ACAGTN','motif_ACNGGT','motif_ACTGGN','motif_AGGGCN','motif_AGNCGT','motif_AGNCTT','motif_ANAGCT','motif_ANCAGT','motif_ANCGCT','motif_ANCTGT','motif_ANGACT','motif_ANGCCT','motif_ANGTCT','motif_ANTGCT','motif_ATGNCT','motif_ATNGCT','motif_CAAGTNNCA','motif_CACNGT','motif_CAGNAT','motif_CAGNCT','motif_CAGNGT','motif_CAGTNT','motif_CANCTG','motif_CANGTT','motif_CANTTG','motif_CATGNT','motif_CCAGCN','motif_CCANGT','motif_CCANTG','motif_CCCTNA','motif_CCNAGT','motif_CCNGAT','motif_CCNGCA','motif_CCNGGA','motif_CGACNT','motif_CGANCT','motif_CGNTGA','motif_CNAATG','motif_CNACTG','motif_CNAGGT','motif_CNAGTCTC','motif_CNAGTT','motif_CNATGG','motif_CNCAGT','motif_CNCATG','motif_CNGAAT','motif_CNGACT','motif_CNGATG','motif_CNGATT','motif_CNGCAG','motif_CNGCAT','motif_CNGCCA','motif_CNGGAT','motif_CNGGTA','motif_CTAGNG','motif_CTAGNT','motif_CTANGG','motif_CTATGN','motif_CTCANG','motif_CTGGGN','motif_CTGGNG','motif_CTNAGT','motif_CTNATG','motif_CTNGAT','motif_CTNTAG','motif_CTTANG','motif_CTTNAG','motif_GAACNT','motif_GAAGNT','motif_GACNCT','motif_GACNGT','motif_GACNTG','motif_GAGNCT','motif_GANACT','motif_GANCAT','motif_GANGTC','motif_GANTCT','motif_GANTTC','motif_GATCTN','motif_GATNTC','motif_GCAANT','motif_GCAATN','motif_GCACNT','motif_GCANTG','motif_GCNACT','motif_GCNCAT','motif_GCNGAT','motif_GCTCANGG','motif_GCTNAT','motif_GGACTN','motif_GGAGCN','motif_GGANTC','motif_GGCANT','motif_GGCNAT','motif_GGCNCA','motif_GGGACN','motif_GGNATC','motif_GGNCAT','motif_GNAATC','motif_GNACAT','motif_GNACCT','motif_GNACTT','motif_GNATCC','motif_GNATCT','motif_GNATTC','motif_GNCAAT','motif_GNCATC','motif_GNCATG','motif_GNCATT','motif_GNCTAG','motif_GNGAGC','motif_GNGCTA','motif_GNTACC','motif_GNTACT','motif_GNTCAT','motif_GTAANC','motif_GTACTN','motif_GTANCT','motif_GTCANC','motif_GTCANG','motif_GTCATN','motif_GTCNAG','motif_GTNACC','motif_GTNACT','motif_GTNATC','motif_GTNCAT','motif_GTNGAC','motif_GTTNAC','motif_TAACNG','motif_TAANGC','motif_TACANG','motif_TACTGN','motif_TAGCNG','motif_TAGGNC','motif_TAGNCT','motif_TAGNGC','motif_TAGNTC','motif_TAGTNC','motif_TANAGC','motif_TCAANG','motif_TCACNG','motif_TCAGNT','motif_TCCNGC','motif_TCNAGT','motif_TCNGAG','motif_TCNGGA','motif_TCTNAG','motif_TGAANC','motif_TGACNC','motif_TGACNG','motif_TGANAC','motif_TGANCT','motif_TGCNAG','motif_TGCTAN','motif_TGGAGN','motif_TGNACC','motif_TGNACT','motif_TGNCAC','motif_TGNCAT','motif_TGNCCA','motif_TGNCTA','motif_TGNGAC','motif_TGNTCA','motif_TGTANC','motif_TGTNAC','motif_TNAAGC','motif_TNAGCA','motif_TNAGCC','motif_TNAGGC','motif_TNATGC','motif_TNCAAG','motif_TNCACG','motif_TNCAGA','motif_TNCAGT','motif_TNCATG','motif_TNCGCA','motif_TNCTAG','motif_TNCTGA','motif_TNGACA','motif_TNGGAC','motif_TNGGCA','motif_TNTAGC','motif_TNTGCA','motif_TTACNG','motif_TTCANG','motif_TTCNGA','motif_TTGACN','motif_TTGCAN','motif_TTGNCA','motif_TTNAGC','motif_TTNCAG'];
    var oTable = $('.ff_sample_list').dataTable({
var pval = [1,1,1,1,6.13482e-09,1,1,1,1,1,0.999604,1,1,1,1,1,1,1,1,1,1,0.00708028,1,1,1,1,0.999946,1,1,1,1,1,0.997015,1,1,1,1,1,1,1,1,0.999984,1,1,1,0.00816367,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.0100364,1,1,0.96714,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999993,1,1,1,1,1,1,1,1,1,1,5.89797e-08,0.999999,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.993238,1,1,1,1,1,1,1,1,0.0390238,1,1,0.343053,1,1,0.980803,1,1,1,0.999689,1,1,1,1,1,1,1,1,1,1,1,1,0.825871,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.997359,1,1,1,1,1,1,1,1,1,1,1,1,0.999947,1,1,0.998966,1,1,1,1,1,1,1,1,1,1,1,1,1,0.911901,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999755,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.000493084,8.77295e-51,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.998598,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999987,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999974,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,1,1,1,1,1,0.991086,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.906871,1,0.994737,1,0.834479,1,0.997178,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.993321,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1.05417e-08,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.835013,1,9.23934e-10,1,1,1,1,1,1,1,1,1,1,1,1,1,0.997324,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999999,0.938664,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.337207,1,1,1,1,1,1,0.999988,1,1,1,0.645058,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999992,1.51362e-09,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.988897,1,0.99984,1,1,1,0.999998,1,1,0.989695,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,9.93892e-06,1,1,1,1,1,1,1,1,1,1,1,1,1,0.702219,1,1,1,1,1,1,1,1,1,1,1,1,6.60378e-15,1.49915e-09,1,1,1,7.26153e-12,1.56756e-07,1,1,0.560302,1,1,0.199247,1.76124e-05,0.99994,1,1,1,2.55112e-06,0.323866,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1.42689e-05,1,1,1,0.561362,1,1,1,0.0545097,1,5.60293e-08,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.003232,1,0.999999,1,1,1,1,1.86691e-11,1,1,1,1,0.879851,0.953685,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.606544,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999975,1,1,1,0.999998,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.00434176,1,1,1,0.999999,1,1,1,1,1,1,1,0.999999,1,1,1,1,1,1,1,0.99999,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999976,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.998762,1,0.303727,1,1,2.07678e-05,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0.999991,1,2.07441e-34,1,0.957223,1,1,1,1,1,1,1,1,1,0.999946,1,1,1,0.999943,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1];
var data = [];
for(i1=0;i1<motifs.length;i1++){
//data.push([motifs[i1],pval[i1]]);
data.push([motifs[i1],""]);
}


    $('#tfbs_overexpression_table').dataTable({
//"aaData": [["one", 1],["two", 3],["three", 0]],
"aaData": data,
"aoColumns": [{ "sTitle": "Motifs", "sWidth": "200pt", "fnRender": function(obj) {return sReturn = obj.aData[ obj.iDataColumn ].replace("BestGuess","<br>BestGuess");}},{ "sTitle": "p-value" }]
});
});
});
});
</script>
</script>
<table id="tfbs_overexpression_table"></table>
</html>
</html>


 
{{#ask:[[Concept:FF_samples_withname]]|[[Sample_species::Human (Homo sapiens)]]|mainlabel=FF ontology id|?Name|?Sample_category|?datafreeze_phase
 
|format=ttable|class=ff_sample_list|limit=20|searchlabel=}}
{{REVISIONTIMESTAMP}}
{{#ifexpr: {{#expr: {{REVISIONTIMESTAMP}}-20120731160000 }} > 0 | yes }}
 
{{CURRENTTIMESTAMP}}
 
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{{#jstest:
{{#ask:[[Category:FF Ontology]][[Sample_species::Mouse (Mus musculus)]]|?id|?Name|?sample_tissue|?sample_cell_line=|?sample_cell_type|?rna_sample_type|format=template|template=Datatable_sampledata|sep=,|limit=2000}}
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SELECT ?x,?y WHERE {
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Latest revision as of 18:50, 20 February 2014

FF ontology idNameSample categoryDatafreeze phase
10000-101A1Clontech Human Universal Reference Total RNA, pool1tissues2
10001-101A3Clontech Mouse Universal Reference Total RNA, pool1tissues2
10002-101A5SABiosciences XpressRef Human Universal Total RNA, pool1tissues2
10003-101A7SABiosciences XpressRef Mouse Universal Total RNA, pool1tissues2
10004-101A9chicken embryo whole body, day10 (HH37)tissues-1
10005-101B1{{{name}}}{{{sample_category}}}-1
10006-101B2Universal RNA - Dog Normal Tissues Biochain, pool1tissues-1
10007-101B4Universal RNA - Human Normal Tissues Biochain, pool1tissues2
10008-101B6Universal RNA - Mouse Normal Tissues Biochain, pool1tissues2
10009-101B8Universal RNA - Rat Normal Tissues Biochain, pool1tissues-1
10010-101C1adipose tissue, adult, pool1tissues2
10011-101C2bladder, adult, pool1tissues2
10012-101C3brain, adult, pool1tissues2
10013-101C4cervix, adult, pool1tissues2
10014-101C5colon, adult, pool1tissues2
10015-101C6esophagus, adult, pool1tissues2
10016-101C7heart, adult, pool1tissues2
10017-101C8kidney, adult, pool1tissues2
10018-101C9liver, adult, pool1tissues2
10019-101D1lung, adult, pool1tissues2
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