FFCP PHASE1:Hg19::chr5:133451694..133451705,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:133451694..133451705,- | |||
|coexpression_cluster_id=C1952 | |coexpression_cluster_id=C1952 | ||
|description=CAGE_peak_at_chr5:133451694..133451705,- | |description=CAGE_peak_at_chr5:133451694..133451705,- | ||
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|ontology_enrichment_celltype=CL:0000084!1.24e-10!25;CL:0000827!1.24e-10!25;CL:0000542!6.90e-10!53;CL:0000051!6.90e-10!53;CL:0000838!3.56e-09!52;CL:0000791!5.28e-08!18;CL:0000789!5.28e-08!18;CL:0002420!5.28e-08!18;CL:0002419!5.28e-08!18;CL:0000790!5.28e-08!18;CL:0000625!5.91e-07!11 | |ontology_enrichment_celltype=CL:0000084!1.24e-10!25;CL:0000827!1.24e-10!25;CL:0000542!6.90e-10!53;CL:0000051!6.90e-10!53;CL:0000838!3.56e-09!52;CL:0000791!5.28e-08!18;CL:0000789!5.28e-08!18;CL:0002420!5.28e-08!18;CL:0002419!5.28e-08!18;CL:0000790!5.28e-08!18;CL:0000625!5.91e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000084;1.26e-16;25!CL:0000624;6.34e-12;6!CL:0000791;6.68e-09;18!CL:0000789;6.68e-09;18!CL:0002419;6.68e-09;18!CL:0000542;3.10e-07;53!CL:0000623;8.86e-07;3 | |ontology_enrichment_celltype_v019=CL:0000084;1.26e-16;25!CL:0000624;6.34e-12;6!CL:0000791;6.68e-09;18!CL:0000789;6.68e-09;18!CL:0002419;6.68e-09;18!CL:0000542;3.10e-07;53!CL:0000623;8.86e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.33e-16,25;CL:0000827,1.33e-16,25;CL:0000624,6.34e-12,6;CL:0000838,3.02e-11,52;CL:0000542,4.97e-11,53;CL:0000051,4.97e-11,53;CL:0000791,6.51e-09,18;CL:0000789,6.51e-09,18;CL:0002420,6.51e-09,18;CL:0002419,6.51e-09,18;CL:0000790,6.51e-09,18 | |||
|ontology_enrichment_development_v019=CL:0000790;6.68e-09;18!CL:0000051;3.10e-07;53 | |ontology_enrichment_development_v019=CL:0000790;6.68e-09;18!CL:0000051;3.10e-07;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.33e-34;2!UBERON:0005058;3.33e-34;2!UBERON:0009113;3.33e-34;2!UBERON:0000029;9.48e-18;1!UBERON:0004177;2.49e-14;5!UBERON:0005057;2.49e-14;5 | |ontology_enrichment_uberon_v019=UBERON:0002370;3.33e-34;2!UBERON:0005058;3.33e-34;2!UBERON:0009113;3.33e-34;2!UBERON:0000029;9.48e-18;1!UBERON:0004177;2.49e-14;5!UBERON:0005057;2.49e-14;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000029,5.26e-18,1;UBERON:0002370,9.51e-18,4;UBERON:0005058,9.51e-18,4;UBERON:0009113,9.51e-18,4;UBERON:0003295,9.51e-18,4;UBERON:0005562,9.51e-18,4;UBERON:0003351,3.64e-12,6;UBERON:0004177,1.46e-10,7;UBERON:0005057,1.46e-10,7;UBERON:0000974,1.16e-07,10;UBERON:0003408,1.16e-07,10;UBERON:0001042,1.16e-07,10;UBERON:0009145,1.16e-07,10;UBERON:0006562,4.85e-07,11;UBERON:0009722,4.85e-07,11;UBERON:0007690,4.85e-07,11 | |||
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| ||
|short_description=p@chr5:133451694..133451705,- | |short_description=p@chr5:133451694..133451705,- | ||
}} | }} |
Latest revision as of 09:45, 30 July 2015
Short description: | p@chr5:133451694..133451705, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:133451694..133451705, - |
Coexpression cluster: | C1952_thymus_Hodgkin_acute_CD8_CD4_Whole_lymph |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.33e-16 | 25 |
pro-T cell | 1.33e-16 | 25 |
CD4-positive, alpha-beta T cell | 6.34e-12 | 6 |
lymphoid lineage restricted progenitor cell | 3.02e-11 | 52 |
lymphocyte | 4.97e-11 | 53 |
common lymphoid progenitor | 4.97e-11 | 53 |
mature alpha-beta T cell | 6.51e-09 | 18 |
alpha-beta T cell | 6.51e-09 | 18 |
immature T cell | 6.51e-09 | 18 |
mature T cell | 6.51e-09 | 18 |
immature alpha-beta T cell | 6.51e-09 | 18 |
Ontology term | p-value | n |
---|---|---|
lymph node | 5.26e-18 | 1 |
thymus | 9.51e-18 | 4 |
hemolymphoid system gland | 9.51e-18 | 4 |
thymic region | 9.51e-18 | 4 |
pharyngeal gland | 9.51e-18 | 4 |
thymus primordium | 9.51e-18 | 4 |
pharyngeal epithelium | 3.64e-12 | 6 |
hemopoietic organ | 1.46e-10 | 7 |
immune organ | 1.46e-10 | 7 |
neck | 1.16e-07 | 10 |
gland of gut | 1.16e-07 | 10 |
chordate pharynx | 1.16e-07 | 10 |
pharyngeal region of foregut | 1.16e-07 | 10 |
pharynx | 4.85e-07 | 11 |
entire pharyngeal arch endoderm | 4.85e-07 | 11 |
early pharyngeal endoderm | 4.85e-07 | 11 |