FFCP PHASE1:Hg19::chr2:128398118..128398151,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55679 | |EntrezGene=55679 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16084 | |HGNC=16084 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-140bp_to_ENST00000494613_5end | |association_with_transcript=-140bp_to_ENST00000494613_5end | ||
|cluster_id=chr2:128398118..128398151,- | |||
|description=CAGE_peak_16_at_LIMS2_5end | |description=CAGE_peak_16_at_LIMS2_5end | ||
|id=chr2:128398118..128398151,- | |id=chr2:128398118..128398151,- | ||
|ontology_enrichment_celltype=CL:0000084!2.37e-07!25;CL:0000827!2.37e-07!25 | |ontology_enrichment_celltype=CL:0000084!2.37e-07!25;CL:0000827!2.37e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000182;3.96e-13;12!CL:0000624;3.89e-10;6!CL:0000898;1.86e-09;3!CL:0000084;6.46e-09;25!CL:0000228;1.04e-07;1!CL:0002372;1.04e-07;1!CL:0000895;1.04e-07;1!CL:0000669;1.64e-07;4 | |ontology_enrichment_celltype_v019=CL:0000182;3.96e-13;12!CL:0000624;3.89e-10;6!CL:0000898;1.86e-09;3!CL:0000084;6.46e-09;25!CL:0000228;1.04e-07;1!CL:0002372;1.04e-07;1!CL:0000895;1.04e-07;1!CL:0000669;1.64e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,5.02e-13,12;CL:0000624,3.55e-10,6;CL:0000898,1.50e-09,3;CL:0000084,5.81e-09,25;CL:0000827,5.81e-09,25;CL:0000810,6.10e-08,1;CL:0000895,6.10e-08,1;CL:0002436,6.10e-08,1;CL:0002427,6.10e-08,1;CL:0002428,6.10e-08,1;CL:0002429,6.10e-08,1;CL:0002433,6.10e-08,1;CL:0002431,6.10e-08,1;CL:0002432,6.10e-08,1;CL:0000228,7.97e-08,1;CL:0002372,7.97e-08,1;CL:0000669,1.27e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.81e-09;11!UBERON:0009497;4.97e-08;13!CL:0002427;1.04e-07;1 | |ontology_enrichment_development_v019=UBERON:0004161;1.81e-09;11!UBERON:0009497;4.97e-08;13!CL:0002427;1.04e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:6193;3.79e-08;1 | |ontology_enrichment_disease_v019=DOID:6193;3.79e-08;1 | ||
|ontology_enrichment_disease_v019_2=DOID:6193,3.32e-08,1 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.21e-08;19!UBERON:0006925;3.21e-08;19 | |ontology_enrichment_uberon_v019=UBERON:0002107;3.21e-08;19!UBERON:0006925;3.21e-08;19 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.71e-08,19;UBERON:0006925,3.71e-08,19;UBERON:0008836,3.71e-08,19;UBERON:0008835,5.14e-07,22;UBERON:0003894,5.14e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.655324116390517,0.263766978228454,0.123766352960047,0,0,0,0,0,0.492484232307152,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0.387336002901508,0.284338464974843,0,0,0.200544447470142,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0.400395987036012,0,0.661044872784862,0,0,0,0,0,0,0,0.196709770113833,1.17903228824749,0,3.51091640320424,0.32592226663359,1.4203434172042,1.94826728407911,0.668462741311041,1.17842362989935,0.664601683750863,0,0.896639238079726,0.260118695119756,0.822189523018381,1.38175008892924,2.31842468588042,0.14828656316206,0.267540828089713,1.04535523804977,4.30575502250752,1.91610246800961,0.34362744548263,0.506039384039006,0,0,0,0.150575119077773,0.127986611154418,0,0.473554504088034,0,0.201606743224732,0.267440195783507,0.434473211648397,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0.596287222100115,0,1.04142150482278,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0.17859945656816,0.22452937262617,0.788280363383256,0,0,1.28241220751285,0,0,0,0,0.25326102332916,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0.103325781175765,0,0,0,0,0.505008341862199,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0.67824236924195,0,0,0,0.121973706129595,0.265059536642971,0.348581828608555,0.621966330092223,0.756962552626885,0.36497735907583,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0.196221465125346,0,0,1.40241773803446,0,0,0,0,0,3.5317047953172,0,0.171567810298526,0,0,0,0,0,0,0,0.34779121492523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0,0,0,0,0,0,0,0,0.266422179016099,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0.144781306667579,0.410952645100767,0.716243852959582,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0.542530047399471,0,0,0,0,0,0,0,0.664225598535437,0,0.173767228936166,1.95801157462741,0,0.206768026122887,0.431428401637234,0.533637789017222,0,0,0.30239029332968,0,0,0,0.128139149255701,0.511707249066704,0,0,0.462629081407967,0.177561725313127,0,0,0,0.120859449591622,0,0,0,0,0,0.902399225814824,0.0770153371044148,2.35304930753057,0,0.844413031143006,1.13733384070897,0.510281115829547,0,0,0,3.01013864312912,0,0,0.223874754722178,0,0,0.769350375349168,0.984043937099117,0,0,0,0,0,0,0,0.676695028044854,0,0,0,0.214840489736547,0.145016693914229,0.0852266274161009,0.356128142586949,0,0,0,0,0,0,0.6970372701606,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0.196498082026242,0,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0.961416640147258,0,0,0.743212700502875,0.144269212976445,7.25646802153824,1.4348364545594,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0.689486746482929,0.583209226766509,0,0,0,0,0,0,0.219385397153973,0.10893846351899,0,0,0,0.23056390438806,0,0,0,0,0,4.08773192782946,0,0,0,0,0,0,0,0,0.163232808159148,0,0.432777279484182,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,3.41531455235751,0,0,0,0,0,3.95567874684718,0,0,0,0,0.264768380074501,0,0.274083849293502,0,0.0633107959558787,0,0,0,0,0,0,0.343189995723929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,1.10296455230113,1.07140615895516,1.61768505250044,0,0,0,0.136203406111576,0.321506296930038,0,0.415440338029185,0,0,0.182248669974074,0,0,0.0524545881349981,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0.113312091520126,0,0,0.129282956361551,0.26446520348538,0,0,0,0.157204305099666,0,0,0,0.487170393523584,0,0,0,0,0,0,0,0.244052529803926,0.1251909307065,0,0,0.18628920882415,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0.0887023701626388,0.460935950223117,0,0,0,0,0,0,0,0,0,0,0,0.214429632529969,1.58013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0.410651227424988,0,0,0,0.397901550322736,0,0,1.09940516745429,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0.386747327841463,0,0,0,0,0,0.458729283404541,0,0,0.271965960763659,0,0,0,0,0,0.630832124175395,0.437062287854782,1.26698501011437,0,0,0.36757959813938,0,0.0757786982182394,0,0,0.103432995861895,0.213233981900981,0.23806443146374,0.645889098360061,0.682821857254437,0,0,0.202117188958219,0,0.342233301085281,0.202056159043763,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 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| ||
|short_description=p16@LIMS2 | |short_description=p16@LIMS2 | ||
}} | }} |
Latest revision as of 20:55, 16 September 2015
Short description: | p16@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_LIMS2_5end |
Coexpression cluster: | NA |
Association with transcript: | -140bp_to_ENST00000494613_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 5.02e-13 | 12 |
CD4-positive, alpha-beta T cell | 3.55e-10 | 6 |
naive T cell | 1.50e-09 | 3 |
T cell | 5.81e-09 | 25 |
pro-T cell | 5.81e-09 | 25 |
CD4-positive, alpha-beta thymocyte | 6.10e-08 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 6.10e-08 | 1 |
mature CD4 single-positive thymocyte | 6.10e-08 | 1 |
resting double-positive thymocyte | 6.10e-08 | 1 |
double-positive blast | 6.10e-08 | 1 |
CD69-positive double-positive thymocyte | 6.10e-08 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 6.10e-08 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 6.10e-08 | 1 |
CD24-positive, CD4 single-positive thymocyte | 6.10e-08 | 1 |
multinucleate cell | 7.97e-08 | 1 |
myotube | 7.97e-08 | 1 |
pericyte cell | 1.27e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
liver | 3.71e-08 | 19 |
digestive gland | 3.71e-08 | 19 |
liver bud | 3.71e-08 | 19 |
hepatic diverticulum | 5.14e-07 | 22 |
liver primordium | 5.14e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 3.32e-08 | 1 |