FFCP PHASE1:Hg19::chr11:33722600..33722612,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:33722600..33722612,+ | |||
|description=CAGE_peak_at_chr11:33722600..33722612,+ | |description=CAGE_peak_at_chr11:33722600..33722612,+ | ||
|id=chr11:33722600..33722612,+ | |id=chr11:33722600..33722612,+ | ||
|ontology_enrichment_celltype=CL:0002321!1.78e-12!248;CL:0000220!2.43e-12!246;CL:0000115!1.32e-09!35;CL:0002139!3.23e-09!24;CL:0000071!6.21e-09!18;CL:0002546!6.21e-09!18;CL:0002078!8.15e-08!44;CL:0002368!8.89e-08!13;CL:0000066!9.73e-08!254;CL:1000449!4.99e-07!16 | |ontology_enrichment_celltype=CL:0002321!1.78e-12!248;CL:0000220!2.43e-12!246;CL:0000115!1.32e-09!35;CL:0002139!3.23e-09!24;CL:0000071!6.21e-09!18;CL:0002546!6.21e-09!18;CL:0002078!8.15e-08!44;CL:0002368!8.89e-08!13;CL:0000066!9.73e-08!254;CL:1000449!4.99e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0002202;2.99e-11;9!CL:0002632;2.99e-11;9!CL:1000449;3.70e-10;15!CL:0002368;3.94e-10;13!CL:0002328;1.02e-09;3!CL:0000307;2.67e-09;3!CL:0002188;5.65e-09;5!CL:1000497;8.56e-09;17!CL:0002518;8.56e-09;17!CL:0000115;4.56e-08;36!CL:0002681;2.02e-07;12!CL:0002584;2.02e-07;12 | |ontology_enrichment_celltype_v019=CL:0002202;2.99e-11;9!CL:0002632;2.99e-11;9!CL:1000449;3.70e-10;15!CL:0002368;3.94e-10;13!CL:0002328;1.02e-09;3!CL:0000307;2.67e-09;3!CL:0002188;5.65e-09;5!CL:1000497;8.56e-09;17!CL:0002518;8.56e-09;17!CL:0000115;4.56e-08;36!CL:0002681;2.02e-07;12!CL:0002584;2.02e-07;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0002202,3.68e-11,9;CL:0002632,3.68e-11,9;CL:1000449,1.89e-10,15;CL:0002368,4.58e-10,13;CL:0000115,7.05e-10,36;CL:0002328,1.10e-09,3;CL:0000068,3.42e-09,3;CL:0000069,3.42e-09,3;CL:0000307,3.42e-09,3;CL:0000377,3.42e-09,3;CL:0002188,3.46e-09,5;CL:1000497,4.78e-09,17;CL:0002518,4.78e-09,17;CL:0002078,1.32e-08,45;CL:0002321,5.35e-08,250;CL:0002681,1.21e-07,12;CL:0002584,1.21e-07,12;CL:0000066,6.89e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000377;2.67e-09;3 | |ontology_enrichment_development_v019=CL:0000377;2.67e-09;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!2.85e-13!312;UBERON:0000025!1.39e-12!194;UBERON:0000483!1.67e-12!309;UBERON:0004111!7.62e-12!241;UBERON:0003914!1.48e-09!118;UBERON:0001986!6.21e-09!18;UBERON:0004638!6.21e-09!18;UBERON:0004852!6.21e-09!18;UBERON:0000477!8.67e-09!286;UBERON:0000055!2.01e-08!69;UBERON:0000487!2.91e-08!22;UBERON:0002049!4.09e-08!79;UBERON:0007798!4.09e-08!79;UBERON:0001981!5.21e-08!60;UBERON:0007500!5.21e-08!60;UBERON:0004537!5.21e-08!60;UBERON:0006965!5.21e-08!60;UBERON:0004211!4.99e-07!16;UBERON:0001285!4.99e-07!16;UBERON:0007684!4.99e-07!16;UBERON:0003220!4.99e-07!16;UBERON:0004208!4.99e-07!16;UBERON:0004872!9.33e-07!84 | |ontology_enrichment_uberon=UBERON:0000119!2.85e-13!312;UBERON:0000025!1.39e-12!194;UBERON:0000483!1.67e-12!309;UBERON:0004111!7.62e-12!241;UBERON:0003914!1.48e-09!118;UBERON:0001986!6.21e-09!18;UBERON:0004638!6.21e-09!18;UBERON:0004852!6.21e-09!18;UBERON:0000477!8.67e-09!286;UBERON:0000055!2.01e-08!69;UBERON:0000487!2.91e-08!22;UBERON:0002049!4.09e-08!79;UBERON:0007798!4.09e-08!79;UBERON:0001981!5.21e-08!60;UBERON:0007500!5.21e-08!60;UBERON:0004537!5.21e-08!60;UBERON:0006965!5.21e-08!60;UBERON:0004211!4.99e-07!16;UBERON:0001285!4.99e-07!16;UBERON:0007684!4.99e-07!16;UBERON:0003220!4.99e-07!16;UBERON:0004208!4.99e-07!16;UBERON:0004872!9.33e-07!84 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.70e-10;15!UBERON:0004819;3.70e-10;15!UBERON:0001285;3.70e-10;15!UBERON:0007684;3.70e-10;15!UBERON:0004815;1.02e-09;3!UBERON:0002031;1.02e-09;3!UBERON:0002118;1.15e-08;5!UBERON:0000353;1.04e-07;15!UBERON:0001225;2.02e-07;12!UBERON:0008987;2.02e-07;12!UBERON:0000490;5.93e-07;33!UBERON:0006554;7.75e-07;30!UBERON:0001008;7.75e-07;30 | |ontology_enrichment_uberon_v019=UBERON:0006555;3.70e-10;15!UBERON:0004819;3.70e-10;15!UBERON:0001285;3.70e-10;15!UBERON:0007684;3.70e-10;15!UBERON:0004815;1.02e-09;3!UBERON:0002031;1.02e-09;3!UBERON:0002118;1.15e-08;5!UBERON:0000353;1.04e-07;15!UBERON:0001225;2.02e-07;12!UBERON:0008987;2.02e-07;12!UBERON:0000490;5.93e-07;33!UBERON:0006554;7.75e-07;30!UBERON:0001008;7.75e-07;30 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.89e-10,15;UBERON:0009773,1.89e-10,15;UBERON:0001231,1.89e-10,15;UBERON:0001285,1.89e-10,15;UBERON:0007684,1.89e-10,15;UBERON:0004208,1.89e-10,15;UBERON:0006555,1.05e-09,16;UBERON:0004819,1.05e-09,16;UBERON:0004815,1.10e-09,3;UBERON:0002031,1.10e-09,3;UBERON:0002118,1.89e-08,5;UBERON:0000353,6.20e-08,15;UBERON:0003914,9.75e-08,117;UBERON:0001225,1.21e-07,12;UBERON:0008987,1.21e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,2.09340350391728,1.52908960491121,0.527533956456907,0,0,0,0,0,0.487932798790507,0.369363174230364,0.408001382488506,0,1.14494394852423,0.958120975510189,0.251085279189606,0,0,0,0,0,0,3.67768489791571,3.0120591877825,2.21852406100073,0.387336002901508,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0.619412741790207,0.575384784644301,0.256160706529101,0.709446689665756,0,0,0,0.188242339542605,0,0,0.306083892370903,1.28371610830437,0,0.329851300186716,0.398927315243264,0,0.580418477257168,2.26954089876456,1.86846674698672,0.251248665256743,0,1.52032191293582,0.605399502633369,0.368277635987565,1.26584954976354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0.670700859703636,0,0,0,0,0,0,0.283604451492204,0.221729397462564,0.175669571386252,0.458426764241994,2.18577172975525,0.370784442784429,0,0,0.26591592103773,0,1.14398982156026,0,0.993812036833525,1.72046919021225,0.347140501607594,1.13061588384802,1.25849830862972,0.275118041940067,1.8809546988313,0,0,0.66944122552934,0.805658634218294,3.04108842287405,0.24406205754817,0.367663080345869,0.81014194788176,0.0892997282840798,0.22452937262617,0.225222960966644,6.13266549863533,5.69559395740877,0.916008719652036,0,0,0.436094052142534,0,0,0.132409180813219,0,0.354668382198357,1.12135520028461,1.06748995729705,0,0,0.134710672069688,0.163461903113459,0,0,0,0,1.1409436430889,0.149448680551801,0.822041490506354,0.809364721840658,1.12360645361799,0,0.368502951935304,0,0,0.247266929278557,0.910161361938026,0,0.505008341862199,0,0,0.438977620880838,0,0,0.340296549480063,0.538168907066586,0,0,0,0,0.257640540045629,0.18611685633159,0.337552664482532,0.0974370051611986,0,0.0920498986422993,0,0.710019185033229,0.10075209822764,0.339121184620975,0.773043412653187,0.545492241181669,0.573609190778008,0.121973706129595,0.132529768321485,0.348581828608555,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.38474715694639,0,1.40241773803446,0,0,0,0,0,0.441463099414651,0.122988438543114,0,0.548751427043128,1.1240175325762,0.301586917234893,0.462942225792648,0,2.07986957055916,0,0.115930404975077,0,0.721832238805369,1.38895653772983,0.570762456703795,0,0,0,0,0,0.93733833986777,1.84780341018745,1.55952606966625,0,0.290633938513962,2.68367875415648,0,0,0.414656231081544,0.432359860250884,0.50496973370552,0,0,3.51652341630141,1.71072446022705,0.205654985406647,0.600686115687835,0,0.897048674762886,0.43596006883328,0.36669142910475,0,0,0,0,1.04007436911366,0.257207374262142,0,0.799266537048298,0,0,0,0.325736184293735,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0.434343920002738,0.61642896765115,0.179060963239896,0.224170287987055,0.788123040807709,0,0.256686072559497,1.01637849688985,0,0,0,1.27587750330633,0.749007023947182,0,0.414415513436035,0,0,0.271265023699736,0,0.178428988797162,0,0,0,0,0,0,0.553107505625109,0.0868836144680828,0,0,0.206768026122887,0,0,1.21251028578504,0,2.41912234663744,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0.120859449591622,1.00253235151642,0,0.114814448164607,0.182091168006717,0,1.35359883872224,0.539107359730903,2.35304930753057,1.46139224653261,0.422206515571503,2.27466768141793,1.70093705276516,0.215915916102139,1.54227252690289,0,0.501689773854853,0.509752546090077,1.66215201785745,0.671624264166535,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,1.14853107599234,1.30012049207304,0,0.096670718292122,0,0.15350367472613,0.275673144969061,0,0,0.255679882248303,0,0.330569830721956,0.576570202095319,2.29702882490251,0.809262246844399,0,0.31481234683064,1.3940745403212,0.308033580176089,0,0.869932992075073,0.55597265731176,0.286249773483982,0,0.316379424718726,0,0,0,0,2.35484592059769,0,0,0.235624804691373,0,1.58510321173008,0.421258456238981,0.48763373908959,0.243713489631284,1.05650146756755,0,0.141405431953713,0,0.551365343546124,0.66343897524122,0.438450885253763,0.578775534266688,0,1.62328301570163,2.16876448669825,0,0.430234056612155,0,0.7133421029625,0.709522128141196,0,0,0.379473173765715,0.349934720244983,1.25088746543166,3.35151137767894,3.26672954583968,0.282431402330337,1.72202149068492,0,1.33029046061003,0.229723400206959,0.507447609232169,0,0,0,0,0,0,0,0,0,0.735120647943095,0.185803175125719,0.28853842595289,0.284567373393656,0.159426272728822,0,0.191505370132367,0.846694330895531,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0,2.62618933211459,0,0.307160702099232,0,0.281338832821026,0.222617410045812,0,0,0,0,0,0.102268682502155,0.123084805461069,0,0.449341755736634,0,0,0,0,0,0,0,0,0,0,0,0,0.762760950878299,0,0,0.583209226766509,0.173624994933292,0.885741385813839,0.120596438625408,0,0,0,0,0,0.278847488557207,0,0.341826167541004,0,0,0,1.91400695839152,0,0.533034776018635,0,0.156980256395025,0,0,0,0.167821586975843,0,0,0,0,0.282706142867882,0,0,0,0,0.296521128680622,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0.31593289814244,0.300646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| ||
|short_description=p@chr11:33722600..33722612,+ | |short_description=p@chr11:33722600..33722612,+ | ||
}} | }} |
Latest revision as of 21:39, 23 July 2015
Short description: | p@chr11:33722600..33722612, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:33722600..33722612, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 3.68e-11 | 9 |
epithelial cell of lower respiratory tract | 3.68e-11 | 9 |
epithelial cell of nephron | 1.89e-10 | 15 |
respiratory epithelial cell | 4.58e-10 | 13 |
endothelial cell | 7.05e-10 | 36 |
bronchial epithelial cell | 1.10e-09 | 3 |
duct epithelial cell | 3.42e-09 | 3 |
branched duct epithelial cell | 3.42e-09 | 3 |
tracheal epithelial cell | 3.42e-09 | 3 |
tracheoblast | 3.42e-09 | 3 |
glomerular endothelial cell | 3.46e-09 | 5 |
kidney cell | 4.78e-09 | 17 |
kidney epithelial cell | 4.78e-09 | 17 |
meso-epithelial cell | 1.32e-08 | 45 |
embryonic cell | 5.35e-08 | 250 |
kidney cortical cell | 1.21e-07 | 12 |
renal cortical epithelial cell | 1.21e-07 | 12 |
epithelial cell | 6.89e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 1.89e-10 | 15 |
renal tubule | 1.89e-10 | 15 |
nephron tubule | 1.89e-10 | 15 |
nephron | 1.89e-10 | 15 |
uriniferous tubule | 1.89e-10 | 15 |
nephrogenic mesenchyme | 1.89e-10 | 15 |
excretory tube | 1.05e-09 | 16 |
kidney epithelium | 1.05e-09 | 16 |
lower respiratory tract epithelium | 1.10e-09 | 3 |
epithelium of bronchus | 1.10e-09 | 3 |
right ovary | 1.89e-08 | 5 |
parenchyma | 6.20e-08 | 15 |
epithelial tube | 9.75e-08 | 117 |
cortex of kidney | 1.21e-07 | 12 |
renal parenchyma | 1.21e-07 | 12 |