FFCP PHASE1:Hg19::chr2:234600310..234600325,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54578 | |EntrezGene=54578 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12538 | |HGNC=12538 | ||
|TSSclassifier=strong | |||
|UniProt=A6NKK6,Q5DT01 | |UniProt=A6NKK6,Q5DT01 | ||
|association_with_transcript=0bp_to_NM_205862,uc002vuu.2_5end | |association_with_transcript=0bp_to_NM_205862,uc002vuu.2_5end | ||
|cluster_id=chr2:234600310..234600325,+ | |||
|coexpression_cluster_id=C1898 | |coexpression_cluster_id=C1898 | ||
|description=CAGE_peak_3_at_UGT1A6_5end | |description=CAGE_peak_3_at_UGT1A6_5end | ||
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|ontology_enrichment_celltype=CL:0000066!2.97e-36!254;CL:0002076!1.95e-25!43;CL:0000223!1.92e-21!59;CL:0002251!1.40e-12!21;CL:0002368!1.47e-12!13;CL:0000076!3.69e-11!62;CL:0002159!1.33e-08!13;CL:0000244!2.70e-07!4;CL:0000731!2.70e-07!4;CL:0002202!3.40e-07!9;CL:0002632!3.40e-07!9 | |ontology_enrichment_celltype=CL:0000066!2.97e-36!254;CL:0002076!1.95e-25!43;CL:0000223!1.92e-21!59;CL:0002251!1.40e-12!21;CL:0002368!1.47e-12!13;CL:0000076!3.69e-11!62;CL:0002159!1.33e-08!13;CL:0000244!2.70e-07!4;CL:0000731!2.70e-07!4;CL:0002202!3.40e-07!9;CL:0002632!3.40e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002076;2.21e-19;42!CL:0002368;5.38e-15;13!CL:0002159;1.09e-13;14!CL:0002251;1.33e-13;20!CL:0000244;1.47e-11;4!CL:0000731;1.47e-11;4!CL:0002166;2.68e-08;3!CL:0000307;3.38e-08;3!CL:0002621;8.26e-08;3!CL:0000362;1.84e-07;9!CL:0000240;1.97e-07;6!CL:0000311;1.97e-07;6!CL:0000079;1.97e-07;6!CL:0000237;1.97e-07;6!CL:0002077;5.02e-07;34!CL:0002202;9.70e-07;9!CL:0002632;9.70e-07;9 | |ontology_enrichment_celltype_v019=CL:0002076;2.21e-19;42!CL:0002368;5.38e-15;13!CL:0002159;1.09e-13;14!CL:0002251;1.33e-13;20!CL:0000244;1.47e-11;4!CL:0000731;1.47e-11;4!CL:0002166;2.68e-08;3!CL:0000307;3.38e-08;3!CL:0002621;8.26e-08;3!CL:0000362;1.84e-07;9!CL:0000240;1.97e-07;6!CL:0000311;1.97e-07;6!CL:0000079;1.97e-07;6!CL:0000237;1.97e-07;6!CL:0002077;5.02e-07;34!CL:0002202;9.70e-07;9!CL:0002632;9.70e-07;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.01e-26,253;CL:0002076,8.67e-25,42;CL:0000223,4.35e-20,58;CL:0002368,5.92e-15,13;CL:0002159,1.15e-13,14;CL:0002251,1.20e-13,20;CL:0000244,1.53e-11,4;CL:0000731,1.53e-11,4;CL:0000076,1.34e-09,63;CL:0002166,2.58e-08,3;CL:0002077,3.12e-08,34;CL:0000068,4.09e-08,3;CL:0000069,4.09e-08,3;CL:0000307,4.09e-08,3;CL:0000377,4.09e-08,3;CL:0002621,8.06e-08,3;CL:0000362,1.89e-07,9;CL:0000240,1.92e-07,6;CL:0000311,1.92e-07,6;CL:0000079,1.92e-07,6;CL:0000237,1.92e-07,6;CL:0000036,1.92e-07,6;CL:0000357,1.92e-07,6;CL:0000114,1.92e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000223;3.17e-12;58!CL:0000377;3.38e-08;3!CL:0000357;1.97e-07;6!CL:0000114;1.97e-07;6 | |ontology_enrichment_development_v019=CL:0000223;3.17e-12;58!CL:0000377;3.38e-08;3!CL:0000357;1.97e-07;6!CL:0000114;1.97e-07;6 | ||
|ontology_enrichment_disease=DOID:305!3.37e-20!106;DOID:0050687!6.18e-14!143;DOID:1749!1.31e-12!14;DOID:299!1.80e-09!25;DOID:162!1.02e-07!235;DOID:14566!2.96e-07!239 | |ontology_enrichment_disease=DOID:305!3.37e-20!106;DOID:0050687!6.18e-14!143;DOID:1749!1.31e-12!14;DOID:299!1.80e-09!25;DOID:162!1.02e-07!235;DOID:14566!2.96e-07!239 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.80e-15;14 | |ontology_enrichment_disease_v019=DOID:1749;1.80e-15;14 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,1.70e-15,14;DOID:305,6.34e-11,106;DOID:0050687,4.30e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.66e-21!169;UBERON:0000925!2.66e-21!169;UBERON:0006595!2.66e-21!169;UBERON:0001004!4.95e-18!72;UBERON:0000065!3.64e-17!53;UBERON:0000077!5.48e-15!130;UBERON:0001007!5.66e-15!155;UBERON:0001555!5.66e-15!155;UBERON:0007026!5.66e-15!155;UBERON:0004921!1.95e-13!129;UBERON:0004185!1.95e-13!129;UBERON:0000072!4.89e-12!46;UBERON:0005911!1.19e-11!82;UBERON:0005153!3.21e-11!37;UBERON:0000161!3.53e-11!35;UBERON:0008947!9.82e-11!38;UBERON:0003258!9.82e-11!38;UBERON:0001008!2.43e-10!45;UBERON:0001041!6.74e-10!98;UBERON:0005178!1.02e-09!34;UBERON:0002224!1.02e-09!34;UBERON:0006554!1.18e-09!44;UBERON:0005181!2.69e-09!35;UBERON:0000365!7.43e-09!5;UBERON:0000162!4.77e-08!14;UBERON:0001353!4.77e-08!14;UBERON:0000163!4.77e-08!14;UBERON:0006866!4.77e-08!14;UBERON:0000164!4.77e-08!14;UBERON:0000931!4.77e-08!14;UBERON:0005157!1.75e-07!51;UBERON:0000344!2.06e-07!12;UBERON:0004122!2.31e-07!15;UBERON:0005910!3.02e-07!6;UBERON:0007196!5.14e-07!14;UBERON:0001558!5.14e-07!14;UBERON:0000915!5.54e-07!52;UBERON:0005177!6.21e-07!107;UBERON:0004807!8.95e-07!28 | |ontology_enrichment_uberon=UBERON:0004119!2.66e-21!169;UBERON:0000925!2.66e-21!169;UBERON:0006595!2.66e-21!169;UBERON:0001004!4.95e-18!72;UBERON:0000065!3.64e-17!53;UBERON:0000077!5.48e-15!130;UBERON:0001007!5.66e-15!155;UBERON:0001555!5.66e-15!155;UBERON:0007026!5.66e-15!155;UBERON:0004921!1.95e-13!129;UBERON:0004185!1.95e-13!129;UBERON:0000072!4.89e-12!46;UBERON:0005911!1.19e-11!82;UBERON:0005153!3.21e-11!37;UBERON:0000161!3.53e-11!35;UBERON:0008947!9.82e-11!38;UBERON:0003258!9.82e-11!38;UBERON:0001008!2.43e-10!45;UBERON:0001041!6.74e-10!98;UBERON:0005178!1.02e-09!34;UBERON:0002224!1.02e-09!34;UBERON:0006554!1.18e-09!44;UBERON:0005181!2.69e-09!35;UBERON:0000365!7.43e-09!5;UBERON:0000162!4.77e-08!14;UBERON:0001353!4.77e-08!14;UBERON:0000163!4.77e-08!14;UBERON:0006866!4.77e-08!14;UBERON:0000164!4.77e-08!14;UBERON:0000931!4.77e-08!14;UBERON:0005157!1.75e-07!51;UBERON:0000344!2.06e-07!12;UBERON:0004122!2.31e-07!15;UBERON:0005910!3.02e-07!6;UBERON:0007196!5.14e-07!14;UBERON:0001558!5.14e-07!14;UBERON:0000915!5.54e-07!52;UBERON:0005177!6.21e-07!107;UBERON:0004807!8.95e-07!28 | ||
|ontology_enrichment_uberon_v019=UBERON:0000365;2.88e-14;5!UBERON:0000486;4.62e-13;12!UBERON:0005910;8.14e-12;6!UBERON:0000344;3.13e-11;20!UBERON:0005911;2.07e-09;36!UBERON:0005178;4.17e-09;34!UBERON:0002224;4.17e-09;34!UBERON:0003729;5.06e-09;13!UBERON:0005181;7.35e-09;35!UBERON:0003126;9.24e-09;7!UBERON:0001005;9.24e-09;7!UBERON:0001949;8.26e-08;3!UBERON:0003350;9.72e-08;8!UBERON:0000974;1.20e-07;6!UBERON:0000065;1.46e-07;44!UBERON:0007196;3.38e-07;15!UBERON:0001558;3.38e-07;15!UBERON:0001004;4.25e-07;65!UBERON:0003343;4.89e-07;4!UBERON:0004785;4.89e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0000365;2.88e-14;5!UBERON:0000486;4.62e-13;12!UBERON:0005910;8.14e-12;6!UBERON:0000344;3.13e-11;20!UBERON:0005911;2.07e-09;36!UBERON:0005178;4.17e-09;34!UBERON:0002224;4.17e-09;34!UBERON:0003729;5.06e-09;13!UBERON:0005181;7.35e-09;35!UBERON:0003126;9.24e-09;7!UBERON:0001005;9.24e-09;7!UBERON:0001949;8.26e-08;3!UBERON:0003350;9.72e-08;8!UBERON:0000974;1.20e-07;6!UBERON:0000065;1.46e-07;44!UBERON:0007196;3.38e-07;15!UBERON:0001558;3.38e-07;15!UBERON:0001004;4.25e-07;65!UBERON:0003343;4.89e-07;4!UBERON:0004785;4.89e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.60e-15,160;UBERON:0000925,4.60e-15,160;UBERON:0006595,4.60e-15,160;UBERON:0000365,3.00e-14,5;UBERON:0001004,1.09e-12,74;UBERON:0005910,8.42e-12,6;UBERON:0000344,2.87e-11,20;UBERON:0005178,5.53e-10,34;UBERON:0002224,5.53e-10,34;UBERON:0000065,6.65e-10,54;UBERON:0005181,1.29e-09,35;UBERON:0003729,4.74e-09,13;UBERON:0003126,9.33e-09,7;UBERON:0001005,9.33e-09,7;UBERON:0001007,1.85e-08,145;UBERON:0001555,1.85e-08,145;UBERON:0007026,1.85e-08,145;UBERON:0001949,8.06e-08,3;UBERON:0003350,9.43e-08,8;UBERON:0007196,3.36e-07,15;UBERON:0001558,3.36e-07,15;UBERON:0005911,4.39e-07,82;UBERON:0003343,4.75e-07,4;UBERON:0004785,4.75e-07,4 | |||
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| ||
|short_description=p3@UGT1A6 | |short_description=p3@UGT1A6 | ||
}} | }} |
Latest revision as of 23:28, 15 September 2015
Short description: | p3@UGT1A6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_UGT1A6_5end |
Coexpression cluster: | C1898_oral_lung_pharyngeal_bronchial_pleomorphic_squamous_Urothelial |
Association with transcript: | 0bp_to_NM_205862, uc002vuu.2_5end |
EntrezGene: | UGT1A6 |
HGNC: | 12538 |
UniProt: | A6NKK6Q5DT01 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.01e-26 | 253 |
endo-epithelial cell | 8.67e-25 | 42 |
endodermal cell | 4.35e-20 | 58 |
respiratory epithelial cell | 5.92e-15 | 13 |
general ecto-epithelial cell | 1.15e-13 | 14 |
epithelial cell of alimentary canal | 1.20e-13 | 20 |
transitional epithelial cell | 1.53e-11 | 4 |
urothelial cell | 1.53e-11 | 4 |
squamous epithelial cell | 1.34e-09 | 63 |
epithelial cell of Malassez | 2.58e-08 | 3 |
ecto-epithelial cell | 3.12e-08 | 34 |
duct epithelial cell | 4.09e-08 | 3 |
branched duct epithelial cell | 4.09e-08 | 3 |
tracheal epithelial cell | 4.09e-08 | 3 |
tracheoblast | 4.09e-08 | 3 |
gingival epithelial cell | 8.06e-08 | 3 |
epidermal cell | 1.89e-07 | 9 |
stratified squamous epithelial cell | 1.92e-07 | 6 |
keratin accumulating cell | 1.92e-07 | 6 |
stratified epithelial cell | 1.92e-07 | 6 |
keratinizing barrier epithelial cell | 1.92e-07 | 6 |
epithelial fate stem cell | 1.92e-07 | 6 |
stratified epithelial stem cell | 1.92e-07 | 6 |
surface ectodermal cell | 1.92e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.60e-15 | 160 |
endoderm | 4.60e-15 | 160 |
presumptive endoderm | 4.60e-15 | 160 |
urothelium | 3.00e-14 | 5 |
respiratory system | 1.09e-12 | 74 |
transitional epithelium | 8.42e-12 | 6 |
mucosa | 2.87e-11 | 20 |
thoracic cavity element | 5.53e-10 | 34 |
thoracic cavity | 5.53e-10 | 34 |
respiratory tract | 6.65e-10 | 54 |
thoracic segment organ | 1.29e-09 | 35 |
mouth mucosa | 4.74e-09 | 13 |
trachea | 9.33e-09 | 7 |
respiratory airway | 9.33e-09 | 7 |
digestive system | 1.85e-08 | 145 |
digestive tract | 1.85e-08 | 145 |
primitive gut | 1.85e-08 | 145 |
gingival epithelium | 8.06e-08 | 3 |
epithelium of mucosa | 9.43e-08 | 8 |
tracheobronchial tree | 3.36e-07 | 15 |
lower respiratory tract | 3.36e-07 | 15 |
endo-epithelium | 4.39e-07 | 82 |
mucosa of oral region | 4.75e-07 | 4 |
respiratory system mucosa | 4.75e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.70e-15 | 14 |
carcinoma | 6.34e-11 | 106 |
cell type cancer | 4.30e-07 | 143 |