FFCP PHASE1:Hg19::chr3:93707380..93707414,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:93707380..93707414,+ | |||
|coexpression_cluster_id=C524 | |coexpression_cluster_id=C524 | ||
|description=CAGE_peak_at_chr3:93707380..93707414,+ | |description=CAGE_peak_at_chr3:93707380..93707414,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000222;3.61e-34;1!CL:0002149;5.74e-23;6!CL:0002255;5.74e-23;6!CL:0002097;7.67e-18;2!CL:0000174;2.31e-12;3 | |ontology_enrichment_celltype_v019=CL:0000222;3.61e-34;1!CL:0002149;5.74e-23;6!CL:0002255;5.74e-23;6!CL:0002097;7.67e-18;2!CL:0000174;2.31e-12;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002149,5.43e-23,6;CL:0002255,5.43e-23,6;CL:0002097,6.48e-18,2;CL:0000174,2.07e-12,3 | |||
|ontology_enrichment_development_v019=UBERON:0007123;3.32e-27;5!UBERON:0005795;3.14e-14;10 | |ontology_enrichment_development_v019=UBERON:0007123;3.32e-27;5!UBERON:0005795;3.14e-14;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3112;3.61e-34;1!DOID:3001;5.74e-23;6!DOID:299;1.16e-12;25!DOID:170;8.02e-07;6 | |ontology_enrichment_disease_v019=DOID:3112;3.61e-34;1!DOID:3001;5.74e-23;6!DOID:299;1.16e-12;25!DOID:170;8.02e-07;6 | ||
|ontology_enrichment_disease_v019_2=DOID:3112,5.05e-34,1;DOID:3001,5.43e-23,6;DOID:299,1.18e-12,25;DOID:170,7.58e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0002090!2.60e-07!6 | |ontology_enrichment_uberon=UBERON:0002090!2.60e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0002046;3.32e-27;5!UBERON:0002369;2.31e-12;3!UBERON:0001235;2.31e-12;3!UBERON:0006858;2.31e-12;3!UBERON:0002368;1.37e-09;33!UBERON:0000995;8.72e-09;17!UBERON:0003975;2.38e-08;18!UBERON:0004175;2.73e-07;21 | |ontology_enrichment_uberon_v019=UBERON:0002046;3.32e-27;5!UBERON:0002369;2.31e-12;3!UBERON:0001235;2.31e-12;3!UBERON:0006858;2.31e-12;3!UBERON:0002368;1.37e-09;33!UBERON:0000995;8.72e-09;17!UBERON:0003975;2.38e-08;18!UBERON:0004175;2.73e-07;21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002046,4.06e-27,5;UBERON:0004117,4.06e-27,5;UBERON:0007689,4.06e-27,5;UBERON:0007123,4.06e-27,5;UBERON:0003091,4.06e-27,5;UBERON:0009722,6.11e-13,11;UBERON:0007690,6.11e-13,11;UBERON:0002369,2.07e-12,3;UBERON:0001235,2.07e-12,3;UBERON:0006858,2.07e-12,3;UBERON:0002368,3.15e-09,35;UBERON:0008814,2.70e-08,18;UBERON:0000949,2.49e-07,45;UBERON:0000995,2.69e-07,21;UBERON:0005795,5.24e-07,22;UBERON:0003975,5.24e-07,22 | |||
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| ||
|short_description=p@chr3:93707380..93707414,+ | |short_description=p@chr3:93707380..93707414,+ | ||
}} | }} |
Latest revision as of 23:53, 29 July 2015
Short description: | p@chr3:93707380..93707414, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:93707380..93707414, + |
Coexpression cluster: | C524_serous_endometrioid_endometrial_mesothelioma_gall_clear_papillotubular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 5.43e-23 | 6 |
stromal cell of endometrium | 5.43e-23 | 6 |
cortical cell of adrenal gland | 6.48e-18 | 2 |
steroid hormone secreting cell | 2.07e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
thyroid gland | 4.06e-27 | 5 |
pharyngeal pouch | 4.06e-27 | 5 |
thyroid diverticulum | 4.06e-27 | 5 |
pharyngeal pouch 2 | 4.06e-27 | 5 |
thyroid primordium | 4.06e-27 | 5 |
entire pharyngeal arch endoderm | 6.11e-13 | 11 |
early pharyngeal endoderm | 6.11e-13 | 11 |
adrenal gland | 2.07e-12 | 3 |
adrenal cortex | 2.07e-12 | 3 |
adrenal/interrenal gland | 2.07e-12 | 3 |
endocrine gland | 3.15e-09 | 35 |
pharyngeal arch system | 2.70e-08 | 18 |
endocrine system | 2.49e-07 | 45 |
uterus | 2.69e-07 | 21 |
embryonic uterus | 5.24e-07 | 22 |
internal female genitalia | 5.24e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 5.05e-34 | 1 |
female reproductive endometrioid cancer | 5.43e-23 | 6 |
adenocarcinoma | 1.18e-12 | 25 |
endocrine gland cancer | 7.58e-07 | 6 |