FFCP PHASE1:Hg19::chr4:74736459..74736475,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:74736459..74736475,+ | |||
|coexpression_cluster_id=C773 | |coexpression_cluster_id=C773 | ||
|description=CAGE_peak_at_chr4:74736459..74736475,+ | |description=CAGE_peak_at_chr4:74736459..74736475,+ | ||
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|ontology_enrichment_celltype=CL:0000359!2.58e-18!32;CL:0000680!3.69e-17!57;CL:0000056!3.69e-17!57;CL:0000355!3.69e-17!57;CL:0000183!1.06e-15!59;CL:0000192!1.22e-15!42;CL:0000514!1.22e-15!42;CL:0000187!1.94e-15!54;CL:0000393!3.30e-14!60;CL:0000211!3.30e-14!60;CL:0000222!3.47e-14!119;CL:0000220!9.37e-14!246;CL:0002321!2.15e-13!248;CL:0002371!1.38e-11!591;CL:0000548!5.86e-10!679;CL:0000004!5.86e-10!679;CL:0000255!5.86e-10!679;CL:0000144!8.73e-10!625;CL:0000012!1.23e-09!682;CL:0000055!4.44e-09!180;CL:0000003!3.70e-08!722;CL:0002539!4.82e-07!10;CL:0000723!5.84e-07!436;CL:0000048!5.95e-07!430 | |ontology_enrichment_celltype=CL:0000359!2.58e-18!32;CL:0000680!3.69e-17!57;CL:0000056!3.69e-17!57;CL:0000355!3.69e-17!57;CL:0000183!1.06e-15!59;CL:0000192!1.22e-15!42;CL:0000514!1.22e-15!42;CL:0000187!1.94e-15!54;CL:0000393!3.30e-14!60;CL:0000211!3.30e-14!60;CL:0000222!3.47e-14!119;CL:0000220!9.37e-14!246;CL:0002321!2.15e-13!248;CL:0002371!1.38e-11!591;CL:0000548!5.86e-10!679;CL:0000004!5.86e-10!679;CL:0000255!5.86e-10!679;CL:0000144!8.73e-10!625;CL:0000012!1.23e-09!682;CL:0000055!4.44e-09!180;CL:0000003!3.70e-08!722;CL:0002539!4.82e-07!10;CL:0000723!5.84e-07!436;CL:0000048!5.95e-07!430 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.02e-32;32!CL:0000192;5.88e-18;43!CL:0002539;3.46e-14;10!CL:0002595;3.36e-12;5!CL:0002494;2.10e-09;16!CL:0000187;2.25e-09;55!CL:0000393;2.54e-08;61!CL:0000211;2.54e-08;61!CL:0002594;5.17e-08;4!CL:0002592;6.61e-08;3!CL:0000775;4.51e-07;3 | |ontology_enrichment_celltype_v019=CL:0000359;1.02e-32;32!CL:0000192;5.88e-18;43!CL:0002539;3.46e-14;10!CL:0002595;3.36e-12;5!CL:0002494;2.10e-09;16!CL:0000187;2.25e-09;55!CL:0000393;2.54e-08;61!CL:0000211;2.54e-08;61!CL:0002594;5.17e-08;4!CL:0002592;6.61e-08;3!CL:0000775;4.51e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000359,3.79e-35,32;CL:0000192,3.45e-24,43;CL:0000514,3.45e-24,43;CL:0000680,1.51e-20,58;CL:0000056,1.51e-20,58;CL:0000355,1.51e-20,58;CL:0000187,8.41e-19,55;CL:0000393,3.24e-16,61;CL:0000211,3.24e-16,61;CL:0002539,3.42e-14,10;CL:0000222,2.93e-13,121;CL:0002595,3.34e-12,5;CL:0000048,8.47e-11,427;CL:0000723,2.18e-10,433;CL:0002321,5.67e-10,250;CL:0000034,7.37e-10,441;CL:0002494,1.70e-09,16;CL:0002594,4.56e-08,4;CL:0002592,6.34e-08,3;CL:0000775,3.67e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000514;5.88e-18;43!CL:0000355;1.19e-11;58 | |ontology_enrichment_development_v019=CL:0000514;5.88e-18;43!CL:0000355;1.19e-11;58 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;1.40e-08;14!DOID:120;2.15e-08;27!DOID:193;1.26e-07;29 | |ontology_enrichment_disease_v019=DOID:2394;1.40e-08;14!DOID:120;2.15e-08;27!DOID:193;1.26e-07;29 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,1.48e-08,14;DOID:120,2.00e-08,27;DOID:193,1.17e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0002049!2.37e-21!79;UBERON:0007798!2.37e-21!79;UBERON:0001637!1.57e-19!42;UBERON:0003509!1.57e-19!42;UBERON:0004572!1.57e-19!42;UBERON:0001009!9.43e-19!113;UBERON:0004535!2.11e-18!110;UBERON:0000055!5.08e-17!69;UBERON:0004573!1.00e-16!33;UBERON:0004571!1.00e-16!33;UBERON:0000486!8.77e-16!82;UBERON:0001134!4.65e-15!61;UBERON:0002036!4.65e-15!61;UBERON:0003082!4.65e-15!61;UBERON:0004872!7.68e-15!84;UBERON:0001981!9.14e-15!60;UBERON:0007500!9.14e-15!60;UBERON:0004537!9.14e-15!60;UBERON:0006965!9.14e-15!60;UBERON:0002385!4.03e-14!63;UBERON:0001015!4.03e-14!63;UBERON:0000383!4.03e-14!63;UBERON:0004290!6.58e-14!70;UBERON:0000914!1.16e-12!83;UBERON:0002329!1.16e-12!83;UBERON:0003077!1.16e-12!83;UBERON:0003059!1.16e-12!83;UBERON:0007282!1.16e-12!83;UBERON:0009618!1.16e-12!83;UBERON:0007285!1.16e-12!83;UBERON:0003914!7.96e-11!118;UBERON:0000490!1.09e-10!138;UBERON:0005256!3.72e-09!143;UBERON:0000477!9.89e-09!286;UBERON:0002204!1.38e-08!167;UBERON:0000119!2.20e-08!312;UBERON:0003081!4.15e-08!216;UBERON:0000483!4.72e-08!309;UBERON:0000923!9.22e-08!604;UBERON:0005291!9.22e-08!604;UBERON:0006598!9.22e-08!604;UBERON:0002532!9.22e-08!604;UBERON:0004111!1.08e-07!241;UBERON:0002050!1.15e-07!605;UBERON:0005423!1.15e-07!605;UBERON:0000467!1.37e-07!625;UBERON:0000480!1.69e-07!626;UBERON:0000926!2.88e-07!448;UBERON:0004120!2.88e-07!448;UBERON:0006603!2.88e-07!448;UBERON:0000468!4.28e-07!659;UBERON:0004237!4.82e-07!10;UBERON:0004695!4.82e-07!10;UBERON:0002111!4.82e-07!10;UBERON:0004178!4.82e-07!10;UBERON:0000922!5.04e-07!612;UBERON:0000481!9.46e-07!347 | |ontology_enrichment_uberon=UBERON:0002049!2.37e-21!79;UBERON:0007798!2.37e-21!79;UBERON:0001637!1.57e-19!42;UBERON:0003509!1.57e-19!42;UBERON:0004572!1.57e-19!42;UBERON:0001009!9.43e-19!113;UBERON:0004535!2.11e-18!110;UBERON:0000055!5.08e-17!69;UBERON:0004573!1.00e-16!33;UBERON:0004571!1.00e-16!33;UBERON:0000486!8.77e-16!82;UBERON:0001134!4.65e-15!61;UBERON:0002036!4.65e-15!61;UBERON:0003082!4.65e-15!61;UBERON:0004872!7.68e-15!84;UBERON:0001981!9.14e-15!60;UBERON:0007500!9.14e-15!60;UBERON:0004537!9.14e-15!60;UBERON:0006965!9.14e-15!60;UBERON:0002385!4.03e-14!63;UBERON:0001015!4.03e-14!63;UBERON:0000383!4.03e-14!63;UBERON:0004290!6.58e-14!70;UBERON:0000914!1.16e-12!83;UBERON:0002329!1.16e-12!83;UBERON:0003077!1.16e-12!83;UBERON:0003059!1.16e-12!83;UBERON:0007282!1.16e-12!83;UBERON:0009618!1.16e-12!83;UBERON:0007285!1.16e-12!83;UBERON:0003914!7.96e-11!118;UBERON:0000490!1.09e-10!138;UBERON:0005256!3.72e-09!143;UBERON:0000477!9.89e-09!286;UBERON:0002204!1.38e-08!167;UBERON:0000119!2.20e-08!312;UBERON:0003081!4.15e-08!216;UBERON:0000483!4.72e-08!309;UBERON:0000923!9.22e-08!604;UBERON:0005291!9.22e-08!604;UBERON:0006598!9.22e-08!604;UBERON:0002532!9.22e-08!604;UBERON:0004111!1.08e-07!241;UBERON:0002050!1.15e-07!605;UBERON:0005423!1.15e-07!605;UBERON:0000467!1.37e-07!625;UBERON:0000480!1.69e-07!626;UBERON:0000926!2.88e-07!448;UBERON:0004120!2.88e-07!448;UBERON:0006603!2.88e-07!448;UBERON:0000468!4.28e-07!659;UBERON:0004237!4.82e-07!10;UBERON:0004695!4.82e-07!10;UBERON:0002111!4.82e-07!10;UBERON:0004178!4.82e-07!10;UBERON:0000922!5.04e-07!612;UBERON:0000481!9.46e-07!347 | ||
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| ||
|short_description=p@chr4:74736459..74736475,+ | |short_description=p@chr4:74736459..74736475,+ | ||
}} | }} |
Latest revision as of 06:45, 30 July 2015
Short description: | p@chr4:74736459..74736475, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:74736459..74736475, + |
Coexpression cluster: | C773_Smooth_mesenchymal_Hair_Lymphatic_Preadipocyte_Aortic_anaplastic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 3.79e-35 | 32 |
smooth muscle cell | 3.45e-24 | 43 |
smooth muscle myoblast | 3.45e-24 | 43 |
muscle precursor cell | 1.51e-20 | 58 |
myoblast | 1.51e-20 | 58 |
multi-potent skeletal muscle stem cell | 1.51e-20 | 58 |
muscle cell | 8.41e-19 | 55 |
electrically responsive cell | 3.24e-16 | 61 |
electrically active cell | 3.24e-16 | 61 |
aortic smooth muscle cell | 3.42e-14 | 10 |
mesodermal cell | 2.93e-13 | 121 |
smooth muscle cell of the subclavian artery | 3.34e-12 | 5 |
multi fate stem cell | 8.47e-11 | 427 |
somatic stem cell | 2.18e-10 | 433 |
embryonic cell | 5.67e-10 | 250 |
stem cell | 7.37e-10 | 441 |
cardiocyte | 1.70e-09 | 16 |
smooth muscle cell of the umbilical artery | 4.56e-08 | 4 |
smooth muscle cell of the coronary artery | 6.34e-08 | 3 |
neutrophil | 3.67e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.48e-08 | 14 |
female reproductive organ cancer | 2.00e-08 | 27 |
reproductive organ cancer | 1.17e-07 | 29 |