FFCP PHASE1:Hg19::chr20:61298969..61298988,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=28231 | |EntrezGene=28231 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10953 | |HGNC=10953 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-104bp_to_ENST00000466961_5end | |association_with_transcript=-104bp_to_ENST00000466961_5end | ||
|cluster_id=chr20:61298969..61298988,+ | |||
|coexpression_cluster_id=C1872 | |coexpression_cluster_id=C1872 | ||
|description=CAGE_peak_6_at_SLCO4A1_5end | |description=CAGE_peak_6_at_SLCO4A1_5end | ||
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|ontology_enrichment_celltype=CL:0000148!1.70e-57!10;CL:0000541!1.70e-57!10;CL:0000147!5.82e-41!14;CL:0002567!3.36e-36!3;CL:0000710!1.54e-28!20;CL:0000075!5.21e-21!27;CL:0002077!4.33e-17!33;CL:0002178!6.74e-17!3;CL:0000325!2.26e-14!39;CL:0002566!1.61e-13!1;CL:0000333!5.59e-13!41;CL:0000133!5.81e-09!59;CL:0000221!2.22e-07!71 | |ontology_enrichment_celltype=CL:0000148!1.70e-57!10;CL:0000541!1.70e-57!10;CL:0000147!5.82e-41!14;CL:0002567!3.36e-36!3;CL:0000710!1.54e-28!20;CL:0000075!5.21e-21!27;CL:0002077!4.33e-17!33;CL:0002178!6.74e-17!3;CL:0000325!2.26e-14!39;CL:0002566!1.61e-13!1;CL:0000333!5.59e-13!41;CL:0000133!5.81e-09!59;CL:0000221!2.22e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0000148;1.61e-87;10!CL:0000147;1.55e-62;14!CL:0002567;1.98e-54;3!CL:0000710;8.97e-44;20!CL:0000075;2.09e-32;27!CL:0002178;4.31e-25;3!CL:0002077;1.08e-22;34!CL:0002566;1.08e-19;1 | |ontology_enrichment_celltype_v019=CL:0000148;1.61e-87;10!CL:0000147;1.55e-62;14!CL:0002567;1.98e-54;3!CL:0000710;8.97e-44;20!CL:0000075;2.09e-32;27!CL:0002178;4.31e-25;3!CL:0002077;1.08e-22;34!CL:0002566;1.08e-19;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.33e-87,10;CL:0000541,1.33e-87,10;CL:0000147,1.35e-62,14;CL:0002567,1.81e-54,3;CL:0000710,8.15e-44,20;CL:0000075,1.95e-32,27;CL:0002077,9.90e-26,34;CL:0002178,4.31e-25,3;CL:0000333,2.63e-20,41;CL:0002566,8.95e-20,1;CL:0000133,3.06e-14,59;CL:0000221,1.10e-11,72 | |||
|ontology_enrichment_development_v019=CL:0000133;6.20e-08;59 | |ontology_enrichment_development_v019=CL:0000133;6.20e-08;59 | ||
|ontology_enrichment_disease=DOID:1799!7.68e-13!1;DOID:10165!7.68e-13!1;DOID:1798!7.68e-13!1;DOID:3493!2.28e-07!2;DOID:1909!4.42e-07!2 | |ontology_enrichment_disease=DOID:1799!7.68e-13!1;DOID:10165!7.68e-13!1;DOID:1798!7.68e-13!1;DOID:3493!2.28e-07!2;DOID:1909!4.42e-07!2 | ||
|ontology_enrichment_disease_v019=DOID:3493;1.57e-10;2!DOID:4556;2.79e-07;3 | |ontology_enrichment_disease_v019=DOID:3493;1.57e-10;2!DOID:4556;2.79e-07;3 | ||
|ontology_enrichment_disease_v019_2=DOID:3493,1.57e-10,2;DOID:4556,2.97e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0000945!6.81e-07!8;UBERON:0010039!6.81e-07!8 | |ontology_enrichment_uberon=UBERON:0000945!6.81e-07!8;UBERON:0010039!6.81e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0000945;1.75e-15;5!UBERON:0010039;1.75e-15;5 | |ontology_enrichment_uberon_v019=UBERON:0000945;1.75e-15;5!UBERON:0010039;1.75e-15;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000945,4.84e-10,8;UBERON:0010039,4.84e-10,8 | |||
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|short_description=p6@SLCO4A1 | |short_description=p6@SLCO4A1 | ||
}} | }} |
Latest revision as of 11:20, 17 September 2015
Short description: | p6@SLCO4A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SLCO4A1_5end |
Coexpression cluster: | C1872_signet_Melanocyte_large_parotid_submaxillary_salivary_retina |
Association with transcript: | -104bp_to_ENST00000466961_5end |
EntrezGene: | SLCO4A1 |
HGNC: | 10953 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.33e-87 | 10 |
melanoblast | 1.33e-87 | 10 |
pigment cell | 1.35e-62 | 14 |
light melanocyte | 1.81e-54 | 3 |
neurecto-epithelial cell | 8.15e-44 | 20 |
columnar/cuboidal epithelial cell | 1.95e-32 | 27 |
ecto-epithelial cell | 9.90e-26 | 34 |
epithelial cell of stomach | 4.31e-25 | 3 |
migratory neural crest cell | 2.63e-20 | 41 |
dark melanocyte | 8.95e-20 | 1 |
neurectodermal cell | 3.06e-14 | 59 |
ectodermal cell | 1.10e-11 | 72 |
Ontology term | p-value | n |
---|---|---|
stomach | 4.84e-10 | 8 |
food storage organ | 4.84e-10 | 8 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.57e-10 | 2 |
lung large cell carcinoma | 2.97e-07 | 3 |