FFCP PHASE1:Hg19::chr19:1490362..1490375,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54760 | |EntrezGene=54760 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8746 | |HGNC=8746 | ||
|TSSclassifier=strong | |||
|UniProt=B3KQ28 | |UniProt=B3KQ28 | ||
|association_with_transcript=-21bp_to_ENST00000441747_5end | |association_with_transcript=-21bp_to_ENST00000441747_5end | ||
|cluster_id=chr19:1490362..1490375,- | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_2_at_PCSK4_5end | |description=CAGE_peak_2_at_PCSK4_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000346;1.26e-08;3!CL:1000428;1.26e-08;3!CL:0000306;8.85e-07;4!CL:0002222;8.85e-07;4!CL:0002224;8.85e-07;4 | |ontology_enrichment_celltype_v019=CL:0000346;1.26e-08;3!CL:1000428;1.26e-08;3!CL:0000306;8.85e-07;4!CL:0002222;8.85e-07;4!CL:0002224;8.85e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000346,1.12e-08,3;CL:1000428,1.12e-08,3;CL:0000306,9.11e-07,4;CL:0002222,9.11e-07,4;CL:0002224,9.11e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.20e-10;10!UBERON:0005564;6.20e-10;10 | |ontology_enrichment_development_v019=UBERON:0009117;6.20e-10;10!UBERON:0005564;6.20e-10;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5409;8.85e-07;4 | |ontology_enrichment_disease_v019=DOID:5409;8.85e-07;4 | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.85e-13!90;UBERON:0003075!1.29e-12!86;UBERON:0007284!1.29e-12!86;UBERON:0000073!1.30e-12!94;UBERON:0001016!1.30e-12!94;UBERON:0003056!1.50e-12!61;UBERON:0005743!1.57e-12!86;UBERON:0001893!2.76e-12!34;UBERON:0002780!3.10e-12!41;UBERON:0001890!3.10e-12!41;UBERON:0006240!3.10e-12!41;UBERON:0002791!8.34e-12!33;UBERON:0003080!9.56e-12!42;UBERON:0002020!1.99e-11!34;UBERON:0003528!1.99e-11!34;UBERON:0001017!3.86e-11!82;UBERON:0001869!3.96e-11!32;UBERON:0001049!1.48e-10!57;UBERON:0005068!1.48e-10!57;UBERON:0006241!1.48e-10!57;UBERON:0007135!1.48e-10!57;UBERON:0000955!3.51e-10!69;UBERON:0006238!3.51e-10!69;UBERON:0002616!7.81e-10!59;UBERON:0000924!8.07e-10!173;UBERON:0006601!8.07e-10!173;UBERON:0000153!2.86e-09!129;UBERON:0007811!2.86e-09!129;UBERON:0004121!2.96e-09!169;UBERON:0000033!3.75e-09!123;UBERON:0000956!7.05e-09!25;UBERON:0000203!7.05e-09!25;UBERON:0001950!3.13e-08!20;UBERON:0002619!3.94e-08!22 | |ontology_enrichment_uberon=UBERON:0002346!2.85e-13!90;UBERON:0003075!1.29e-12!86;UBERON:0007284!1.29e-12!86;UBERON:0000073!1.30e-12!94;UBERON:0001016!1.30e-12!94;UBERON:0003056!1.50e-12!61;UBERON:0005743!1.57e-12!86;UBERON:0001893!2.76e-12!34;UBERON:0002780!3.10e-12!41;UBERON:0001890!3.10e-12!41;UBERON:0006240!3.10e-12!41;UBERON:0002791!8.34e-12!33;UBERON:0003080!9.56e-12!42;UBERON:0002020!1.99e-11!34;UBERON:0003528!1.99e-11!34;UBERON:0001017!3.86e-11!82;UBERON:0001869!3.96e-11!32;UBERON:0001049!1.48e-10!57;UBERON:0005068!1.48e-10!57;UBERON:0006241!1.48e-10!57;UBERON:0007135!1.48e-10!57;UBERON:0000955!3.51e-10!69;UBERON:0006238!3.51e-10!69;UBERON:0002616!7.81e-10!59;UBERON:0000924!8.07e-10!173;UBERON:0006601!8.07e-10!173;UBERON:0000153!2.86e-09!129;UBERON:0007811!2.86e-09!129;UBERON:0004121!2.96e-09!169;UBERON:0000033!3.75e-09!123;UBERON:0000956!7.05e-09!25;UBERON:0000203!7.05e-09!25;UBERON:0001950!3.13e-08!20;UBERON:0002619!3.94e-08!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.54e-12;8!UBERON:0003135;4.08e-09;11!UBERON:0000412;1.26e-08;3!UBERON:0001992;1.26e-08;3!UBERON:0010077;8.85e-07;4!UBERON:0005389;8.85e-07;4!UBERON:0000484;8.85e-07;4!UBERON:0000965;8.85e-07;4!UBERON:0001803;8.85e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0000473;3.54e-12;8!UBERON:0003135;4.08e-09;11!UBERON:0000412;1.26e-08;3!UBERON:0001992;1.26e-08;3!UBERON:0010077;8.85e-07;4!UBERON:0005389;8.85e-07;4!UBERON:0000484;8.85e-07;4!UBERON:0000965;8.85e-07;4!UBERON:0001803;8.85e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.54e-12,8;UBERON:0003135,4.08e-09,11;UBERON:0000412,1.12e-08,3;UBERON:0001992,1.12e-08,3;UBERON:0010077,9.11e-07,4;UBERON:0005389,9.11e-07,4;UBERON:0000484,9.11e-07,4;UBERON:0002546,9.11e-07,4;UBERON:0000965,9.11e-07,4;UBERON:0001803,9.11e-07,4;UBERON:0003073,9.11e-07,4;UBERON:0005426,9.11e-07,4 | |||
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| ||
|short_description=p2@PCSK4 | |short_description=p2@PCSK4 | ||
}} | }} |
Latest revision as of 06:10, 16 September 2015
Short description: | p2@PCSK4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PCSK4_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -21bp_to_ENST00000441747_5end |
EntrezGene: | PCSK4 |
HGNC: | 8746 |
UniProt: | B3KQ28 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle dermal papilla cell | 1.12e-08 | 3 |
stem cell of epidermis | 1.12e-08 | 3 |
crystallin accumulating cell | 9.11e-07 | 4 |
vertebrate lens cell | 9.11e-07 | 4 |
lens epithelial cell | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
testis | 3.54e-12 | 8 |
male reproductive organ | 4.08e-09 | 11 |
dermal papilla | 1.12e-08 | 3 |
papillary layer of dermis | 1.12e-08 | 3 |
cuboidal epithelium | 9.11e-07 | 4 |
transparent eye structure | 9.11e-07 | 4 |
simple cuboidal epithelium | 9.11e-07 | 4 |
cranial placode | 9.11e-07 | 4 |
lens of camera-type eye | 9.11e-07 | 4 |
epithelium of lens | 9.11e-07 | 4 |
lens placode | 9.11e-07 | 4 |
lens vesicle | 9.11e-07 | 4 |