FFCP PHASE1:Hg19::chr2:106810742..106810775,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80146 | |EntrezGene=80146 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17729 | |HGNC=17729 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NBZ7,B4E3U7,C9JE50,C9JW33,B3KV61 | |UniProt=Q8NBZ7,B4E3U7,C9JE50,C9JW33,B3KV61 | ||
|association_with_transcript=0bp_to_ENST00000409501,ENST00000428048,ENST00000441952,ENST00000457835,ENST00000483426,ENST00000540130_5end | |association_with_transcript=0bp_to_ENST00000409501,ENST00000428048,ENST00000441952,ENST00000457835,ENST00000483426,ENST00000540130_5end | ||
|cluster_id=chr2:106810742..106810775,- | |||
|description=CAGE_peak_1_at_UXS1_5end | |description=CAGE_peak_1_at_UXS1_5end | ||
|id=chr2:106810742..106810775,- | |id=chr2:106810742..106810775,- | ||
|ontology_enrichment_celltype=CL:0000222!8.24e-11!119;CL:0002321!2.41e-09!248;CL:0000220!2.89e-09!246;CL:0000548!1.34e-08!679;CL:0000004!1.34e-08!679;CL:0000255!1.34e-08!679;CL:0000192!2.19e-08!42;CL:0000514!2.19e-08!42;CL:0000012!2.84e-08!682;CL:0000003!4.80e-08!722;CL:0000359!5.95e-08!32;CL:0000680!7.64e-08!57;CL:0000056!7.64e-08!57;CL:0000355!7.64e-08!57;CL:0000187!5.37e-07!54;CL:0000183!6.87e-07!59 | |ontology_enrichment_celltype=CL:0000222!8.24e-11!119;CL:0002321!2.41e-09!248;CL:0000220!2.89e-09!246;CL:0000548!1.34e-08!679;CL:0000004!1.34e-08!679;CL:0000255!1.34e-08!679;CL:0000192!2.19e-08!42;CL:0000514!2.19e-08!42;CL:0000012!2.84e-08!682;CL:0000003!4.80e-08!722;CL:0000359!5.95e-08!32;CL:0000680!7.64e-08!57;CL:0000056!7.64e-08!57;CL:0000355!7.64e-08!57;CL:0000187!5.37e-07!54;CL:0000183!6.87e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000359;2.12e-07;32!CL:1000497;6.75e-07;17!CL:0002518;6.75e-07;17 | |ontology_enrichment_celltype_v019=CL:0000359;2.12e-07;32!CL:1000497;6.75e-07;17!CL:0002518;6.75e-07;17 | ||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.35e-10,121;CL:0002321,3.03e-09,250;CL:0000359,5.95e-08,32;CL:0000192,1.14e-07,43;CL:0000514,1.14e-07,43;CL:0000680,2.87e-07,58;CL:0000056,2.87e-07,58;CL:0000355,2.87e-07,58;CL:1000497,6.92e-07,17;CL:0002518,6.92e-07,17;CL:0000066,7.52e-07,253 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!4.00e-12!118;UBERON:0000926!7.55e-12!448;UBERON:0004120!7.55e-12!448;UBERON:0006603!7.55e-12!448;UBERON:0005256!1.38e-11!143;UBERON:0000490!1.08e-10!138;UBERON:0004535!1.55e-10!110;UBERON:0001009!4.39e-10!113;UBERON:0002049!1.10e-09!79;UBERON:0007798!1.10e-09!79;UBERON:0000486!2.90e-09!82;UBERON:0000055!6.73e-09!69;UBERON:0001637!1.11e-08!42;UBERON:0003509!1.11e-08!42;UBERON:0004572!1.11e-08!42;UBERON:0002100!7.41e-08!216;UBERON:0004573!8.24e-08!33;UBERON:0004571!8.24e-08!33;UBERON:0001134!9.40e-08!61;UBERON:0002036!9.40e-08!61;UBERON:0003082!9.40e-08!61;UBERON:0001981!1.55e-07!60;UBERON:0007500!1.55e-07!60;UBERON:0004537!1.55e-07!60;UBERON:0006965!1.55e-07!60;UBERON:0004290!1.65e-07!70;UBERON:0000914!2.44e-07!83;UBERON:0002329!2.44e-07!83;UBERON:0003077!2.44e-07!83;UBERON:0003059!2.44e-07!83;UBERON:0007282!2.44e-07!83;UBERON:0009618!2.44e-07!83;UBERON:0007285!2.44e-07!83;UBERON:0003104!7.58e-07!238;UBERON:0009142!7.58e-07!238;UBERON:0002385!8.10e-07!63;UBERON:0001015!8.10e-07!63;UBERON:0000383!8.10e-07!63;UBERON:0004872!8.42e-07!84 | |ontology_enrichment_uberon=UBERON:0003914!4.00e-12!118;UBERON:0000926!7.55e-12!448;UBERON:0004120!7.55e-12!448;UBERON:0006603!7.55e-12!448;UBERON:0005256!1.38e-11!143;UBERON:0000490!1.08e-10!138;UBERON:0004535!1.55e-10!110;UBERON:0001009!4.39e-10!113;UBERON:0002049!1.10e-09!79;UBERON:0007798!1.10e-09!79;UBERON:0000486!2.90e-09!82;UBERON:0000055!6.73e-09!69;UBERON:0001637!1.11e-08!42;UBERON:0003509!1.11e-08!42;UBERON:0004572!1.11e-08!42;UBERON:0002100!7.41e-08!216;UBERON:0004573!8.24e-08!33;UBERON:0004571!8.24e-08!33;UBERON:0001134!9.40e-08!61;UBERON:0002036!9.40e-08!61;UBERON:0003082!9.40e-08!61;UBERON:0001981!1.55e-07!60;UBERON:0007500!1.55e-07!60;UBERON:0004537!1.55e-07!60;UBERON:0006965!1.55e-07!60;UBERON:0004290!1.65e-07!70;UBERON:0000914!2.44e-07!83;UBERON:0002329!2.44e-07!83;UBERON:0003077!2.44e-07!83;UBERON:0003059!2.44e-07!83;UBERON:0007282!2.44e-07!83;UBERON:0009618!2.44e-07!83;UBERON:0007285!2.44e-07!83;UBERON:0003104!7.58e-07!238;UBERON:0009142!7.58e-07!238;UBERON:0002385!8.10e-07!63;UBERON:0001015!8.10e-07!63;UBERON:0000383!8.10e-07!63;UBERON:0004872!8.42e-07!84 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.39e-07;33!UBERON:0004571;1.39e-07;33!UBERON:0001637;4.68e-07;42!UBERON:0003509;4.68e-07;42!UBERON:0004572;4.68e-07;42 | |ontology_enrichment_uberon_v019=UBERON:0004573;1.39e-07;33!UBERON:0004571;1.39e-07;33!UBERON:0001637;4.68e-07;42!UBERON:0003509;4.68e-07;42!UBERON:0004572;4.68e-07;42 | ||
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| ||
|short_description=p1@UXS1 | |short_description=p1@UXS1 | ||
}} | }} |
Latest revision as of 05:14, 16 September 2015
Short description: | p1@UXS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_UXS1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000409501, ENST00000428048, ENST00000441952, ENST00000457835, ENST00000483426, ENST00000540130_5end |
EntrezGene: | UXS1 |
HGNC: | 17729 |
UniProt: | Q8NBZ7B4E3U7C9JE50C9JW33B3KV61 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.35e-10 | 121 |
embryonic cell | 3.03e-09 | 250 |
vascular associated smooth muscle cell | 5.95e-08 | 32 |
smooth muscle cell | 1.14e-07 | 43 |
smooth muscle myoblast | 1.14e-07 | 43 |
muscle precursor cell | 2.87e-07 | 58 |
myoblast | 2.87e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.87e-07 | 58 |
kidney cell | 6.92e-07 | 17 |
kidney epithelial cell | 6.92e-07 | 17 |
epithelial cell | 7.52e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 1.16e-12 | 117 |
cardiovascular system | 2.18e-10 | 109 |
unilaminar epithelium | 3.00e-10 | 148 |
circulatory system | 6.13e-10 | 112 |
mesenchyme | 1.41e-09 | 160 |
entire embryonic mesenchyme | 1.41e-09 | 160 |
vasculature | 1.55e-09 | 78 |
vascular system | 1.55e-09 | 78 |
trunk mesenchyme | 6.04e-09 | 122 |
vessel | 9.42e-09 | 68 |
multilaminar epithelium | 9.82e-09 | 83 |
artery | 1.11e-08 | 42 |
arterial blood vessel | 1.11e-08 | 42 |
arterial system | 1.11e-08 | 42 |
mesoderm | 1.58e-08 | 315 |
mesoderm-derived structure | 1.58e-08 | 315 |
presumptive mesoderm | 1.58e-08 | 315 |
systemic artery | 8.24e-08 | 33 |
systemic arterial system | 8.24e-08 | 33 |
epithelial vesicle | 8.97e-08 | 78 |
epithelial tube open at both ends | 2.15e-07 | 59 |
blood vessel | 2.15e-07 | 59 |
blood vasculature | 2.15e-07 | 59 |
vascular cord | 2.15e-07 | 59 |
trunk | 2.77e-07 | 199 |
skeletal muscle tissue | 3.32e-07 | 62 |
striated muscle tissue | 3.32e-07 | 62 |
myotome | 3.32e-07 | 62 |
somite | 5.20e-07 | 71 |
presomitic mesoderm | 5.20e-07 | 71 |
presumptive segmental plate | 5.20e-07 | 71 |
dermomyotome | 5.20e-07 | 71 |
trunk paraxial mesoderm | 5.20e-07 | 71 |