FFCP PHASE1:Hg19::chr2:226359172..226359184,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:226359172..226359184,+ | |||
|coexpression_cluster_id=C69 | |coexpression_cluster_id=C69 | ||
|description=CAGE_peak_at_chr2:226359172..226359184,+ | |description=CAGE_peak_at_chr2:226359172..226359184,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002586!1.52e-08!3;CL:0002603!3.06e-08!3;CL:0000319!4.18e-07!1;CL:0002568!5.57e-07!1 | |ontology_enrichment_celltype=CL:0002586!1.52e-08!3;CL:0002603!3.06e-08!3;CL:0000319!4.18e-07!1;CL:0002568!5.57e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0001014;3.81e-21;2!CL:0001016;3.81e-21;2!CL:0002586;1.83e-14;3!CL:0000149;3.42e-11;4!CL:0000453;2.74e-09;5!CL:0000840;5.92e-08;5!CL:0002149;6.78e-08;6!CL:0002255;6.78e-08;6 | |ontology_enrichment_celltype_v019=CL:0001014;3.81e-21;2!CL:0001016;3.81e-21;2!CL:0002586;1.83e-14;3!CL:0000149;3.42e-11;4!CL:0000453;2.74e-09;5!CL:0000840;5.92e-08;5!CL:0002149;6.78e-08;6!CL:0002255;6.78e-08;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0001014,3.81e-21,2;CL:0001016,3.81e-21,2;CL:0002586,1.83e-14,3;CL:0000149,3.42e-11,4;CL:0000453,2.74e-09,5;CL:0000840,5.92e-08,5;CL:0001029,5.92e-08,5;CL:0002149,7.25e-08,6;CL:0002255,7.25e-08,6 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:305!1.97e-08!106;DOID:3030!4.18e-07!1 | |ontology_enrichment_disease=DOID:305!1.97e-08!106;DOID:3030!4.18e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:3001;6.78e-08;6 | |ontology_enrichment_disease_v019=DOID:3001;6.78e-08;6 | ||
|ontology_enrichment_disease_v019_2=DOID:3001,7.25e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.27e-21!9;UBERON:0001557!4.25e-13!19;UBERON:0000063!8.90e-11!97;UBERON:0001781!1.52e-08!3;UBERON:0001782!1.52e-08!3;UBERON:0005424!1.52e-08!3;UBERON:0000072!5.23e-08!46;UBERON:0008947!5.71e-08!38;UBERON:0003258!5.71e-08!38;UBERON:0004733!3.02e-07!12;UBERON:0002028!3.02e-07!12;UBERON:0007277!3.02e-07!12;UBERON:0000065!9.25e-07!53 | |ontology_enrichment_uberon=UBERON:0001737!2.27e-21!9;UBERON:0001557!4.25e-13!19;UBERON:0000063!8.90e-11!97;UBERON:0001781!1.52e-08!3;UBERON:0001782!1.52e-08!3;UBERON:0005424!1.52e-08!3;UBERON:0000072!5.23e-08!46;UBERON:0008947!5.71e-08!38;UBERON:0003258!5.71e-08!38;UBERON:0004733!3.02e-07!12;UBERON:0002028!3.02e-07!12;UBERON:0007277!3.02e-07!12;UBERON:0000065!9.25e-07!53 | ||
|ontology_enrichment_uberon_v019=UBERON:0001781;1.83e-14;3!UBERON:0001782;1.83e-14;3!UBERON:0000966;3.22e-09;5!UBERON:0005388;3.22e-09;5!UBERON:0001802;3.22e-09;5 | |ontology_enrichment_uberon_v019=UBERON:0001781;1.83e-14;3!UBERON:0001782;1.83e-14;3!UBERON:0000966;3.22e-09;5!UBERON:0005388;3.22e-09;5!UBERON:0001802;3.22e-09;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,1.83e-14,3;UBERON:0005424,1.83e-14,3;UBERON:0001781,3.42e-11,4;UBERON:0000966,6.78e-08,6;UBERON:0005388,6.78e-08,6;UBERON:0001802,6.78e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.626909442956176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.337169380156203,0,0.330881918197182,0.435758888184812,0.237270619111097,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,1.64007322849853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.9971525546351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0,0.799238438328521,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196854963029498,0,0,0,0,0,0,4.27450393947851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453411851024545,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0.737318726261158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72742072974897,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14553434272025,0,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448527450322454,0,0,0,0,0.0673520530145875,0.143444410785353,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.626909442956176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.337169380156203,0,0.330881918197182,0.435758888184812,0.237270619111097,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,1.64007322849853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.9971525546351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0,0.799238438328521,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196854963029498,0,0,0,0,0,0,4.27450393947851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453411851024545,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0.737318726261158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72742072974897,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14553434272025,0,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448527450322454,0,0,0,0,0.0673520530145875,0.143444410785353,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr2:226359172..226359184,+ | |short_description=p@chr2:226359172..226359184,+ | ||
}} | }} |
Latest revision as of 07:17, 29 July 2015
Short description: | p@chr2:226359172..226359184, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:226359172..226359184, + |
Coexpression cluster: | C69_anaplastic_CD14_cord_hairy_mycosis_adult_NK |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 3.81e-21 | 2 |
immature CD1a-positive Langerhans cell | 3.81e-21 | 2 |
retinal pigment epithelial cell | 1.83e-14 | 3 |
visual pigment cell | 3.42e-11 | 4 |
Langerhans cell | 2.74e-09 | 5 |
immature conventional dendritic cell | 5.92e-08 | 5 |
common dendritic progenitor | 5.92e-08 | 5 |
epithelial cell of uterus | 7.25e-08 | 6 |
stromal cell of endometrium | 7.25e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 1.83e-14 | 3 |
presumptive retinal pigmented epithelium | 1.83e-14 | 3 |
layer of retina | 3.42e-11 | 4 |
retina | 6.78e-08 | 6 |
photoreceptor array | 6.78e-08 | 6 |
posterior segment of eyeball | 6.78e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 7.25e-08 | 6 |